Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3046

Experiment: KB with Avocatin B 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin B 10 mM
3,643,617	+		Psyr_3045	0.50	-3.5
3,643,618	-		Psyr_3045	0.50	-0.9
3,643,618	-		Psyr_3045	0.50	-1.2
3,643,667	+		Psyr_3045	0.53	-0.5
3,643,667	+		Psyr_3045	0.53	-0.1
3,643,667	+		Psyr_3045	0.53	-1.0
3,643,820	+		Psyr_3045	0.62	-1.8
3,643,820	+		Psyr_3045	0.62	-2.1
3,643,973	+		Psyr_3045	0.71	-1.6
3,643,973	+		Psyr_3045	0.71	-0.7
3,643,973	+		Psyr_3045	0.71	-1.9
3,643,974	-		Psyr_3045	0.71	+1.9
3,643,974	-		Psyr_3045	0.71	-2.7
3,643,974	-		Psyr_3045	0.71	+0.3
3,643,974	-		Psyr_3045	0.71	-1.1
3,643,974	-		Psyr_3045	0.71	-2.5
3,644,321	-				-2.0
3,644,486	+				-1.7
3,644,487	-				-0.7
3,644,487	-				-1.5
3,644,536	+		Psyr_3046	0.12	-3.1
3,644,536	+		Psyr_3046	0.12	-0.9
3,644,539	+		Psyr_3046	0.12	-2.0
3,644,539	+		Psyr_3046	0.12	+0.6
3,644,539	+		Psyr_3046	0.12	-2.0
3,644,539	+		Psyr_3046	0.12	-0.7
3,644,540	-		Psyr_3046	0.13	-0.4
3,644,540	-		Psyr_3046	0.13	-1.3
3,644,540	-		Psyr_3046	0.13	-2.0
3,644,860	+		Psyr_3046	0.64	-0.2
3,644,861	-		Psyr_3046	0.64	-0.1
3,644,861	-		Psyr_3046	0.64	-1.2
3,644,861	-		Psyr_3046	0.64	-0.6
3,645,090	-				-1.4
3,645,090	-				-0.1
3,645,105	+				-1.3
3,645,200	+				-2.7
3,645,219	+				+0.0
3,645,219	+				+0.3
3,645,220	-				+1.9
3,645,223	+				+0.1
3,645,224	-				+0.3
3,645,249	+				+0.1
3,645,249	+				+0.9
3,645,252	+				-0.4
3,645,252	+				+0.0
3,645,393	-				-1.1
3,645,393	-				+1.3
3,645,475	-		Psyr_3047	0.24	-0.1
3,645,475	-		Psyr_3047	0.24	+0.1
3,645,475	-		Psyr_3047	0.24	+2.2
3,645,507	+		Psyr_3047	0.31	-0.1
3,645,507	+		Psyr_3047	0.31	-0.7
3,645,507	+		Psyr_3047	0.31	-0.3
3,645,507	+		Psyr_3047	0.31	-0.1
3,645,508	-		Psyr_3047	0.31	-0.7
3,645,508	-		Psyr_3047	0.31	+0.3
3,645,546	+		Psyr_3047	0.39	-1.0
3,645,546	+		Psyr_3047	0.39	+0.3
3,645,546	+		Psyr_3047	0.39	-0.4
3,645,547	-		Psyr_3047	0.40	+0.5
3,645,547	-		Psyr_3047	0.40	-0.1
3,645,547	-		Psyr_3047	0.40	-1.0
3,645,547	-		Psyr_3047	0.40	+0.5
3,645,547	-		Psyr_3047	0.40	-0.1
3,645,547	-		Psyr_3047	0.40	-0.1
3,645,575	+		Psyr_3047	0.46	-0.3
3,645,576	-		Psyr_3047	0.46	-0.5
3,645,576	-		Psyr_3047	0.46	-0.4
3,645,592	+		Psyr_3047	0.50	-0.8
3,645,795	+				+1.5
3,645,795	+				-0.1
3,645,795	+				+0.8
3,645,795	+				-0.4
3,645,795	+				-0.8
3,645,796	-				+0.1
3,645,796	-				+1.4
3,645,796	-				+0.7
3,645,796	-				-0.4
3,645,796	-				-0.3
3,645,796	-				+2.1
3,645,796	-				-0.5
3,645,796	-				-1.8
3,645,817	-				-0.8
3,645,827	+				-1.9