Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2708

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2707 and Psyr_2708 are separated by 145 nucleotidesPsyr_2708 and Psyr_2709 are separated by 73 nucleotides Psyr_2707: Psyr_2707 - transcriptional regulator, LysR family, at 3,288,077 to 3,288,964 _2707 Psyr_2708: Psyr_2708 - Rieske [2Fe-2S] region, at 3,289,110 to 3,290,174 _2708 Psyr_2709: Psyr_2709 - Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region, at 3,290,248 to 3,291,198 _2709 Position (kb) 3289 3290 3291Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3288.174 kb on + strand, within Psyr_2707at 3288.175 kb on - strand, within Psyr_2707at 3288.175 kb on - strandat 3288.175 kb on - strand, within Psyr_2707at 3288.255 kb on + strand, within Psyr_2707at 3288.398 kb on - strand, within Psyr_2707at 3288.398 kb on - strand, within Psyr_2707at 3288.405 kb on + strand, within Psyr_2707at 3288.405 kb on + strand, within Psyr_2707at 3288.405 kb on + strand, within Psyr_2707at 3288.405 kb on + strand, within Psyr_2707at 3288.406 kb on - strand, within Psyr_2707at 3288.408 kb on + strand, within Psyr_2707at 3288.409 kb on - strand, within Psyr_2707at 3288.437 kb on + strand, within Psyr_2707at 3288.448 kb on + strand, within Psyr_2707at 3288.449 kb on - strand, within Psyr_2707at 3288.449 kb on - strand, within Psyr_2707at 3288.526 kb on + strand, within Psyr_2707at 3288.572 kb on + strand, within Psyr_2707at 3288.572 kb on + strand, within Psyr_2707at 3288.572 kb on + strand, within Psyr_2707at 3288.706 kb on - strand, within Psyr_2707at 3288.706 kb on - strand, within Psyr_2707at 3288.706 kb on - strand, within Psyr_2707at 3288.948 kb on + strandat 3289.016 kb on + strandat 3289.016 kb on + strandat 3289.017 kb on - strandat 3289.036 kb on + strandat 3289.132 kb on - strandat 3289.207 kb on - strandat 3289.281 kb on + strand, within Psyr_2708at 3289.281 kb on + strand, within Psyr_2708at 3289.281 kb on + strand, within Psyr_2708at 3289.584 kb on + strand, within Psyr_2708at 3289.584 kb on + strand, within Psyr_2708at 3289.584 kb on + strand, within Psyr_2708at 3289.584 kb on + strand, within Psyr_2708at 3289.584 kb on + strand, within Psyr_2708at 3289.585 kb on - strand, within Psyr_2708at 3289.912 kb on - strand, within Psyr_2708at 3289.912 kb on - strand, within Psyr_2708at 3290.195 kb on + strandat 3290.274 kb on + strandat 3290.395 kb on + strand, within Psyr_2709at 3290.657 kb on - strand, within Psyr_2709at 3290.772 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.809 kb on + strand, within Psyr_2709at 3290.810 kb on - strand, within Psyr_2709at 3290.810 kb on - strand, within Psyr_2709at 3290.810 kb on - strand, within Psyr_2709at 3290.810 kb on - strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.839 kb on + strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.840 kb on - strand, within Psyr_2709at 3290.896 kb on + strand, within Psyr_2709at 3290.897 kb on - strand, within Psyr_2709at 3290.897 kb on - strand, within Psyr_2709at 3290.897 kb on - strand, within Psyr_2709

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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3,288,174 + Psyr_2707 0.11 -0.1
3,288,175 - Psyr_2707 0.11 -0.4
3,288,175 - +0.2
3,288,175 - Psyr_2707 0.11 +2.6
3,288,255 + Psyr_2707 0.20 -2.3
3,288,398 - Psyr_2707 0.36 -0.2
3,288,398 - Psyr_2707 0.36 +1.2
3,288,405 + Psyr_2707 0.37 +0.2
3,288,405 + Psyr_2707 0.37 +2.3
3,288,405 + Psyr_2707 0.37 +0.9
3,288,405 + Psyr_2707 0.37 +0.8
3,288,406 - Psyr_2707 0.37 +1.9
3,288,408 + Psyr_2707 0.37 +1.2
3,288,409 - Psyr_2707 0.37 +0.3
3,288,437 + Psyr_2707 0.41 +0.6
3,288,448 + Psyr_2707 0.42 -0.6
3,288,449 - Psyr_2707 0.42 +1.7
3,288,449 - Psyr_2707 0.42 +0.4
3,288,526 + Psyr_2707 0.51 +0.9
3,288,572 + Psyr_2707 0.56 +0.7
3,288,572 + Psyr_2707 0.56 -1.7
3,288,572 + Psyr_2707 0.56 +0.7
3,288,706 - Psyr_2707 0.71 +0.8
3,288,706 - Psyr_2707 0.71 -0.3
3,288,706 - Psyr_2707 0.71 +0.2
3,288,948 + +0.7
3,289,016 + -0.2
3,289,016 + -0.0
3,289,017 - +1.0
3,289,036 + +1.2
3,289,132 - +1.2
3,289,207 - -1.2
3,289,281 + Psyr_2708 0.16 +1.2
3,289,281 + Psyr_2708 0.16 -0.2
3,289,281 + Psyr_2708 0.16 -0.1
3,289,584 + Psyr_2708 0.45 -0.5
3,289,584 + Psyr_2708 0.45 +1.2
3,289,584 + Psyr_2708 0.45 -0.5
3,289,584 + Psyr_2708 0.45 -0.4
3,289,584 + Psyr_2708 0.45 +0.4
3,289,585 - Psyr_2708 0.45 +0.9
3,289,912 - Psyr_2708 0.75 -0.3
3,289,912 - Psyr_2708 0.75 -0.2
3,290,195 + -0.9
3,290,274 + -1.0
3,290,395 + Psyr_2709 0.15 +0.5
3,290,657 - Psyr_2709 0.43 -0.3
3,290,772 + Psyr_2709 0.55 -0.6
3,290,809 + Psyr_2709 0.59 +0.9
3,290,809 + Psyr_2709 0.59 +0.5
3,290,809 + Psyr_2709 0.59 +0.3
3,290,809 + Psyr_2709 0.59 +0.4
3,290,809 + Psyr_2709 0.59 -0.8
3,290,809 + Psyr_2709 0.59 +1.1
3,290,809 + Psyr_2709 0.59 -0.1
3,290,810 - Psyr_2709 0.59 +1.3
3,290,810 - Psyr_2709 0.59 +0.1
3,290,810 - Psyr_2709 0.59 +0.1
3,290,810 - Psyr_2709 0.59 +0.6
3,290,839 + Psyr_2709 0.62 +0.8
3,290,839 + Psyr_2709 0.62 -1.3
3,290,839 + Psyr_2709 0.62 +3.5
3,290,839 + Psyr_2709 0.62 -0.7
3,290,839 + Psyr_2709 0.62 -0.8
3,290,839 + Psyr_2709 0.62 -0.6
3,290,839 + Psyr_2709 0.62 +0.2
3,290,839 + Psyr_2709 0.62 -0.3
3,290,840 - Psyr_2709 0.62 -0.0
3,290,840 - Psyr_2709 0.62 -0.4
3,290,840 - Psyr_2709 0.62 -0.0
3,290,840 - Psyr_2709 0.62 +0.3
3,290,840 - Psyr_2709 0.62 -0.6
3,290,840 - Psyr_2709 0.62 +0.5
3,290,840 - Psyr_2709 0.62 +0.2
3,290,840 - Psyr_2709 0.62 -1.8
3,290,840 - Psyr_2709 0.62 +0.8
3,290,840 - Psyr_2709 0.62 +2.4
3,290,840 - Psyr_2709 0.62 +1.0
3,290,896 + Psyr_2709 0.68 +0.3
3,290,897 - Psyr_2709 0.68 +0.5
3,290,897 - Psyr_2709 0.68 +0.9
3,290,897 - Psyr_2709 0.68 -0.3

Or see this region's nucleotide sequence