Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2637

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2635 and Psyr_2636 are separated by 96 nucleotidesPsyr_2636 and Psyr_2637 are separated by 368 nucleotidesPsyr_2637 and Psyr_2638 are separated by 47 nucleotides Psyr_2635: Psyr_2635 - conserved hypothetical protein, at 3,201,692 to 3,202,870 _2635 Psyr_2636: Psyr_2636 - TspO/MBR-related protein, at 3,202,967 to 3,203,407 _2636 Psyr_2637: Psyr_2637 - FAD dependent oxidoreductase, at 3,203,776 to 3,205,101 _2637 Psyr_2638: Psyr_2638 - Alpha/beta hydrolase fold protein, at 3,205,149 to 3,206,219 _2638 Position (kb) 3203 3204 3205 3206Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3202.794 kb on + strandat 3202.928 kb on + strandat 3202.929 kb on - strandat 3202.929 kb on - strandat 3202.964 kb on + strandat 3202.964 kb on + strandat 3202.965 kb on - strandat 3203.075 kb on + strand, within Psyr_2636at 3203.170 kb on + strand, within Psyr_2636at 3203.170 kb on + strand, within Psyr_2636at 3203.171 kb on - strand, within Psyr_2636at 3203.171 kb on - strand, within Psyr_2636at 3203.171 kb on - strand, within Psyr_2636at 3203.171 kb on - strand, within Psyr_2636at 3203.385 kb on - strandat 3203.430 kb on + strandat 3203.431 kb on - strandat 3203.431 kb on - strandat 3203.431 kb on - strandat 3203.605 kb on - strandat 3203.611 kb on + strandat 3203.611 kb on + strandat 3203.612 kb on - strandat 3203.612 kb on - strandat 3203.623 kb on + strandat 3203.653 kb on + strandat 3203.654 kb on - strandat 3203.654 kb on - strandat 3203.654 kb on - strandat 3203.657 kb on - strandat 3203.734 kb on - strandat 3203.802 kb on + strandat 3203.802 kb on + strandat 3203.802 kb on + strandat 3203.802 kb on + strandat 3203.803 kb on - strandat 3203.803 kb on - strandat 3203.803 kb on - strandat 3203.875 kb on + strandat 3203.876 kb on - strandat 3203.878 kb on + strandat 3203.879 kb on - strandat 3204.083 kb on - strand, within Psyr_2637at 3204.448 kb on + strand, within Psyr_2637at 3204.488 kb on + strand, within Psyr_2637at 3204.489 kb on - strand, within Psyr_2637at 3204.535 kb on - strand, within Psyr_2637at 3204.575 kb on - strand, within Psyr_2637at 3204.636 kb on + strand, within Psyr_2637at 3204.637 kb on - strand, within Psyr_2637at 3204.811 kb on + strand, within Psyr_2637at 3204.812 kb on - strand, within Psyr_2637at 3204.849 kb on + strand, within Psyr_2637at 3204.849 kb on + strand, within Psyr_2637at 3204.850 kb on - strand, within Psyr_2637at 3204.975 kb on + strandat 3204.999 kb on + strandat 3205.048 kb on + strandat 3205.048 kb on + strandat 3205.049 kb on - strandat 3205.151 kb on - strandat 3205.197 kb on - strandat 3205.198 kb on + strandat 3205.198 kb on + strandat 3205.198 kb on + strandat 3205.199 kb on - strandat 3205.199 kb on - strandat 3205.199 kb on - strandat 3205.253 kb on + strandat 3205.254 kb on - strandat 3205.257 kb on + strand, within Psyr_2638at 3205.257 kb on + strand, within Psyr_2638at 3205.257 kb on + strand, within Psyr_2638at 3205.257 kb on + strand, within Psyr_2638at 3205.257 kb on + strand, within Psyr_2638at 3205.257 kb on + strand, within Psyr_2638at 3205.257 kb on + strand, within Psyr_2638at 3205.258 kb on - strand, within Psyr_2638at 3205.258 kb on - strand, within Psyr_2638at 3205.258 kb on - strand, within Psyr_2638at 3205.258 kb on - strand, within Psyr_2638at 3205.258 kb on - strand, within Psyr_2638at 3205.258 kb on - strand, within Psyr_2638at 3205.261 kb on - strand, within Psyr_2638at 3205.414 kb on + strand, within Psyr_2638at 3205.414 kb on + strand, within Psyr_2638at 3205.415 kb on - strand, within Psyr_2638at 3205.507 kb on + strand, within Psyr_2638at 3205.582 kb on + strand, within Psyr_2638at 3205.582 kb on + strand, within Psyr_2638at 3205.583 kb on - strand, within Psyr_2638at 3205.583 kb on - strand, within Psyr_2638at 3205.583 kb on - strand, within Psyr_2638at 3205.831 kb on + strand, within Psyr_2638at 3205.831 kb on + strand, within Psyr_2638at 3205.831 kb on + strand, within Psyr_2638at 3205.832 kb on - strand, within Psyr_2638at 3205.832 kb on - strand, within Psyr_2638at 3205.832 kb on - strand, within Psyr_2638at 3205.832 kb on - strand, within Psyr_2638at 3205.832 kb on - strand, within Psyr_2638at 3205.832 kb on - strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.916 kb on - strand, within Psyr_2638at 3205.916 kb on - strand, within Psyr_2638at 3205.916 kb on - strand, within Psyr_2638at 3205.916 kb on - strand, within Psyr_2638at 3205.916 kb on - strand, within Psyr_2638at 3205.916 kb on - strand, within Psyr_2638at 3205.918 kb on + strand, within Psyr_2638at 3205.918 kb on + strand, within Psyr_2638at 3205.919 kb on - strand, within Psyr_2638at 3205.919 kb on - strand, within Psyr_2638at 3205.919 kb on - strand, within Psyr_2638at 3205.919 kb on - strand, within Psyr_2638at 3205.919 kb on - strand, within Psyr_2638at 3205.999 kb on + strand, within Psyr_2638at 3206.000 kb on - strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.054 kb on - strand, within Psyr_2638at 3206.054 kb on - strand, within Psyr_2638at 3206.054 kb on - strand, within Psyr_2638at 3206.054 kb on - strand, within Psyr_2638at 3206.054 kb on - strand, within Psyr_2638

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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3,202,794 + -0.2
3,202,928 + +3.5
3,202,929 - +0.7
3,202,929 - +0.4
3,202,964 + +0.9
3,202,964 + +1.5
3,202,965 - +1.7
3,203,075 + Psyr_2636 0.24 -0.4
3,203,170 + Psyr_2636 0.46 +0.2
3,203,170 + Psyr_2636 0.46 -1.4
3,203,171 - Psyr_2636 0.46 -0.7
3,203,171 - Psyr_2636 0.46 -0.6
3,203,171 - Psyr_2636 0.46 -0.7
3,203,171 - Psyr_2636 0.46 -0.7
3,203,385 - +3.2
3,203,430 + +0.2
3,203,431 - +0.6
3,203,431 - -2.2
3,203,431 - +0.9
3,203,605 - +2.0
3,203,611 + +0.0
3,203,611 + +0.5
3,203,612 - -0.6
3,203,612 - +0.3
3,203,623 + +0.1
3,203,653 + -0.3
3,203,654 - -0.0
3,203,654 - +0.9
3,203,654 - +0.6
3,203,657 - +1.2
3,203,734 - -1.8
3,203,802 + -1.6
3,203,802 + +0.4
3,203,802 + -0.2
3,203,802 + +0.9
3,203,803 - +0.3
3,203,803 - +0.7
3,203,803 - -0.1
3,203,875 + -0.2
3,203,876 - -0.3
3,203,878 + -0.5
3,203,879 - -0.2
3,204,083 - Psyr_2637 0.23 -0.8
3,204,448 + Psyr_2637 0.51 +1.5
3,204,488 + Psyr_2637 0.54 -1.7
3,204,489 - Psyr_2637 0.54 +0.3
3,204,535 - Psyr_2637 0.57 -0.6
3,204,575 - Psyr_2637 0.60 +0.2
3,204,636 + Psyr_2637 0.65 +0.7
3,204,637 - Psyr_2637 0.65 -0.2
3,204,811 + Psyr_2637 0.78 -2.0
3,204,812 - Psyr_2637 0.78 -1.0
3,204,849 + Psyr_2637 0.81 -0.0
3,204,849 + Psyr_2637 0.81 -0.4
3,204,850 - Psyr_2637 0.81 -0.2
3,204,975 + -0.4
3,204,999 + -1.6
3,205,048 + +2.7
3,205,048 + -0.4
3,205,049 - +0.0
3,205,151 - -1.2
3,205,197 - +0.0
3,205,198 + +2.2
3,205,198 + +0.2
3,205,198 + +0.2
3,205,199 - +0.6
3,205,199 - +0.7
3,205,199 - +0.1
3,205,253 + -0.9
3,205,254 - -0.3
3,205,257 + Psyr_2638 0.10 +1.2
3,205,257 + Psyr_2638 0.10 +0.7
3,205,257 + Psyr_2638 0.10 +0.6
3,205,257 + Psyr_2638 0.10 -1.1
3,205,257 + Psyr_2638 0.10 +0.6
3,205,257 + Psyr_2638 0.10 +1.6
3,205,257 + Psyr_2638 0.10 +0.7
3,205,258 - Psyr_2638 0.10 +2.7
3,205,258 - Psyr_2638 0.10 +1.9
3,205,258 - Psyr_2638 0.10 +1.9
3,205,258 - Psyr_2638 0.10 +1.9
3,205,258 - Psyr_2638 0.10 +1.7
3,205,258 - Psyr_2638 0.10 +0.9
3,205,261 - Psyr_2638 0.10 -0.6
3,205,414 + Psyr_2638 0.25 +0.6
3,205,414 + Psyr_2638 0.25 +0.3
3,205,415 - Psyr_2638 0.25 +0.8
3,205,507 + Psyr_2638 0.33 +1.6
3,205,582 + Psyr_2638 0.40 -1.2
3,205,582 + Psyr_2638 0.40 +0.3
3,205,583 - Psyr_2638 0.41 +0.4
3,205,583 - Psyr_2638 0.41 -0.1
3,205,583 - Psyr_2638 0.41 -1.7
3,205,831 + Psyr_2638 0.64 -0.2
3,205,831 + Psyr_2638 0.64 +0.2
3,205,831 + Psyr_2638 0.64 -0.1
3,205,832 - Psyr_2638 0.64 +0.4
3,205,832 - Psyr_2638 0.64 -0.5
3,205,832 - Psyr_2638 0.64 +0.0
3,205,832 - Psyr_2638 0.64 -1.2
3,205,832 - Psyr_2638 0.64 +0.7
3,205,832 - Psyr_2638 0.64 +1.7
3,205,915 + Psyr_2638 0.72 -0.4
3,205,915 + Psyr_2638 0.72 -0.6
3,205,915 + Psyr_2638 0.72 -1.4
3,205,915 + Psyr_2638 0.72 +2.5
3,205,915 + Psyr_2638 0.72 +0.3
3,205,915 + Psyr_2638 0.72 +0.8
3,205,915 + Psyr_2638 0.72 -0.5
3,205,915 + Psyr_2638 0.72 +0.6
3,205,916 - Psyr_2638 0.72 -0.1
3,205,916 - Psyr_2638 0.72 +0.9
3,205,916 - Psyr_2638 0.72 -0.8
3,205,916 - Psyr_2638 0.72 +0.9
3,205,916 - Psyr_2638 0.72 -0.8
3,205,916 - Psyr_2638 0.72 +0.3
3,205,918 + Psyr_2638 0.72 +0.6
3,205,918 + Psyr_2638 0.72 -0.5
3,205,919 - Psyr_2638 0.72 +0.2
3,205,919 - Psyr_2638 0.72 +0.6
3,205,919 - Psyr_2638 0.72 -1.8
3,205,919 - Psyr_2638 0.72 -0.8
3,205,919 - Psyr_2638 0.72 +0.0
3,205,999 + Psyr_2638 0.79 +1.9
3,206,000 - Psyr_2638 0.79 -2.0
3,206,053 + Psyr_2638 0.84 +2.3
3,206,053 + Psyr_2638 0.84 -0.6
3,206,053 + Psyr_2638 0.84 +0.9
3,206,053 + Psyr_2638 0.84 -1.5
3,206,053 + Psyr_2638 0.84 +0.3
3,206,053 + Psyr_2638 0.84 +0.7
3,206,053 + Psyr_2638 0.84 -0.4
3,206,053 + Psyr_2638 0.84 +0.1
3,206,053 + Psyr_2638 0.84 +0.0
3,206,053 + Psyr_2638 0.84 +0.6
3,206,054 - Psyr_2638 0.85 +2.7
3,206,054 - Psyr_2638 0.85 +1.2
3,206,054 - Psyr_2638 0.85 -0.5
3,206,054 - Psyr_2638 0.85 +0.8
3,206,054 - Psyr_2638 0.85 -0.1

Or see this region's nucleotide sequence