Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2590

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2589 and Psyr_2590 overlap by 11 nucleotidesPsyr_2590 and Psyr_2591 overlap by 4 nucleotidesPsyr_2591 and Psyr_2592 overlap by 8 nucleotides Psyr_2589: Psyr_2589 - IucA/IucC, at 3,034,919 to 3,036,802 _2589 Psyr_2590: Psyr_2590 - Periplasmic binding protein, at 3,036,792 to 3,037,697 _2590 Psyr_2591: Psyr_2591 - transport system permease protein, at 3,037,694 to 3,038,683 _2591 Psyr_2592: Psyr_2592 - transport system permease protein, at 3,038,676 to 3,039,707 _2592 Position (kb) 3036 3037 3038Strain fitness (log2 ratio) -3 -2 -1 0 1at 3035.935 kb on - strand, within Psyr_2589at 3036.389 kb on - strand, within Psyr_2589at 3036.461 kb on - strand, within Psyr_2589at 3036.560 kb on + strand, within Psyr_2589at 3036.560 kb on + strand, within Psyr_2589at 3036.560 kb on + strand, within Psyr_2589at 3036.560 kb on + strand, within Psyr_2589at 3036.561 kb on - strand, within Psyr_2589at 3036.561 kb on - strand, within Psyr_2589at 3036.561 kb on - strand, within Psyr_2589at 3036.561 kb on - strand, within Psyr_2589at 3036.592 kb on - strand, within Psyr_2589at 3036.828 kb on - strandat 3036.987 kb on + strand, within Psyr_2590at 3036.987 kb on + strand, within Psyr_2590at 3036.988 kb on - strand, within Psyr_2590at 3036.988 kb on - strand, within Psyr_2590at 3037.350 kb on + strand, within Psyr_2590at 3037.350 kb on + strand, within Psyr_2590at 3037.591 kb on + strand, within Psyr_2590at 3037.867 kb on + strand, within Psyr_2591at 3037.868 kb on - strand, within Psyr_2591at 3038.014 kb on + strand, within Psyr_2591at 3038.014 kb on + strand, within Psyr_2591at 3038.014 kb on + strand, within Psyr_2591at 3038.014 kb on + strand, within Psyr_2591at 3038.015 kb on - strand, within Psyr_2591at 3038.378 kb on - strand, within Psyr_2591at 3038.409 kb on + strand, within Psyr_2591at 3038.463 kb on + strand, within Psyr_2591at 3038.463 kb on + strand, within Psyr_2591at 3038.464 kb on - strand, within Psyr_2591at 3038.482 kb on + strand, within Psyr_2591at 3038.482 kb on + strand, within Psyr_2591at 3038.482 kb on + strand, within Psyr_2591at 3038.482 kb on + strand, within Psyr_2591at 3038.482 kb on + strand, within Psyr_2591at 3038.482 kb on + strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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3,035,935 - Psyr_2589 0.54 -0.5
3,036,389 - Psyr_2589 0.78 +0.2
3,036,461 - Psyr_2589 0.82 +1.6
3,036,560 + Psyr_2589 0.87 -0.6
3,036,560 + Psyr_2589 0.87 -1.0
3,036,560 + Psyr_2589 0.87 -0.6
3,036,560 + Psyr_2589 0.87 +0.0
3,036,561 - Psyr_2589 0.87 -0.7
3,036,561 - Psyr_2589 0.87 -1.4
3,036,561 - Psyr_2589 0.87 -1.3
3,036,561 - Psyr_2589 0.87 -1.7
3,036,592 - Psyr_2589 0.89 -0.9
3,036,828 - -1.4
3,036,987 + Psyr_2590 0.22 +0.2
3,036,987 + Psyr_2590 0.22 +0.6
3,036,988 - Psyr_2590 0.22 -2.2
3,036,988 - Psyr_2590 0.22 -3.0
3,037,350 + Psyr_2590 0.62 -2.4
3,037,350 + Psyr_2590 0.62 -1.4
3,037,591 + Psyr_2590 0.88 -0.5
3,037,867 + Psyr_2591 0.17 -2.0
3,037,868 - Psyr_2591 0.18 +1.2
3,038,014 + Psyr_2591 0.32 -0.3
3,038,014 + Psyr_2591 0.32 -2.8
3,038,014 + Psyr_2591 0.32 -1.5
3,038,014 + Psyr_2591 0.32 -1.5
3,038,015 - Psyr_2591 0.32 -1.8
3,038,378 - Psyr_2591 0.69 -0.8
3,038,409 + Psyr_2591 0.72 +1.2
3,038,463 + Psyr_2591 0.78 +0.2
3,038,463 + Psyr_2591 0.78 -1.8
3,038,464 - Psyr_2591 0.78 -2.7
3,038,482 + Psyr_2591 0.80 -2.4
3,038,482 + Psyr_2591 0.80 -0.8
3,038,482 + Psyr_2591 0.80 +0.2
3,038,482 + Psyr_2591 0.80 -1.8
3,038,482 + Psyr_2591 0.80 +1.7
3,038,482 + Psyr_2591 0.80 +0.8
3,038,483 - Psyr_2591 0.80 -2.5
3,038,483 - Psyr_2591 0.80 -0.8
3,038,483 - Psyr_2591 0.80 -1.2
3,038,483 - Psyr_2591 0.80 -2.2
3,038,483 - Psyr_2591 0.80 -3.6
3,038,483 - Psyr_2591 0.80 -2.2
3,038,483 - Psyr_2591 0.80 -0.1

Or see this region's nucleotide sequence