Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2312

Experiment: KB with Avocatin B 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin B 10 mM
2,684,954	+				+0.0
2,684,955	-				-0.0
2,685,202	-		Psyr_2311	0.23	-1.7
2,685,202	-		Psyr_2311	0.23	+2.0
2,685,202	-		Psyr_2311	0.23	-0.8
2,685,259	-		Psyr_2311	0.30	-0.5
2,685,283	-		Psyr_2311	0.33	-0.4
2,685,339	+		Psyr_2311	0.39	-0.4
2,685,429	+		Psyr_2311	0.50	-0.2
2,685,430	-		Psyr_2311	0.50	-0.1
2,685,430	-		Psyr_2311	0.50	-0.3
2,685,430	-		Psyr_2311	0.50	+0.6
2,685,490	-		Psyr_2311	0.57	-0.6
2,685,703	-		Psyr_2311	0.82	-2.6
2,685,900	+				-0.2
2,685,900	+				+0.3
2,685,900	+				-0.5
2,685,901	-				+0.1
2,685,901	-				-0.6
2,685,901	-				-0.2
2,685,901	-				-1.6
2,685,922	+				-1.0
2,685,926	+				+0.3
2,685,926	+				+0.7
2,685,927	-				-0.2
2,685,927	-				-3.6
2,685,940	+				+0.7
2,685,940	+				-0.4
2,686,166	-		Psyr_2312	0.47	-1.1
2,686,480	+				+0.5
2,686,501	+				+1.0
2,686,501	+				-0.3
2,686,501	+				+1.3
2,686,502	-				-0.6
2,686,503	+				-0.9
2,686,503	+				-0.6
2,686,503	+				-1.0
2,686,504	-				-1.2
2,686,505	+				-1.3
2,686,505	+				-0.7
2,686,505	+				+3.0
2,686,505	+				-0.7
2,686,505	+				-1.0
2,686,505	+				+0.9
2,686,505	+				-1.2
2,686,505	+				+0.5
2,686,505	+				-1.6
2,686,505	+				+0.0
2,686,505	+				+0.5
2,686,505	+				-0.8
2,686,505	+				-2.0
2,686,505	+				+0.9
2,686,506	-				-0.4
2,686,506	-				-1.2
2,686,506	-				+0.4
2,686,506	-				+0.6
2,686,506	-				+0.5
2,686,506	-				-0.3
2,686,506	-				+0.1
2,686,506	-				+1.0
2,686,506	-				-2.2
2,686,506	-				+1.0
2,686,506	-				-0.6
2,686,506	-				-0.1
2,686,506	-				-2.4
2,686,506	-				+1.3
2,686,506	-				-0.5
2,686,506	-				+0.9
2,686,506	-				-1.7
2,686,546	+				+1.0
2,686,668	+				-0.4
2,686,668	+				-0.2
2,686,669	-				-1.3
2,686,669	-				-0.8
2,686,669	-				+3.6
2,686,919	+		Psyr_2313	0.19	+0.3
2,686,920	-		Psyr_2313	0.20	+0.5
2,686,920	-		Psyr_2313	0.20	-1.0
2,686,960	-		Psyr_2313	0.22	-2.0
2,686,960	-		Psyr_2313	0.22	-0.6
2,686,960	-		Psyr_2313	0.22	+0.9
2,686,960	-		Psyr_2313	0.22	+1.0
2,687,004	+		Psyr_2313	0.24	+0.1
2,687,005	-		Psyr_2313	0.24	-0.5
2,687,097	-		Psyr_2313	0.29	+0.2
2,687,178	+		Psyr_2313	0.33	+0.2
2,687,203	+		Psyr_2313	0.34	-1.7
2,687,203	+		Psyr_2313	0.34	-0.1
2,687,204	-		Psyr_2313	0.35	+1.0
2,687,204	-		Psyr_2313	0.35	-0.4