Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2227

Experiment: KB with Avocatin B 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin B 10 mM
2,587,942	+				+0.0
2,587,943	-		Psyr_2226	0.22	-0.4
2,588,188	+		Psyr_2226	0.50	+0.1
2,588,188	+		Psyr_2226	0.50	-0.0
2,588,189	-		Psyr_2226	0.50	+0.0
2,588,485	+		Psyr_2226	0.85	-0.8
2,588,486	-				-1.6
2,588,486	-		Psyr_2226	0.85	-1.1
2,588,518	+		Psyr_2226	0.88	-0.3
2,588,519	-		Psyr_2226	0.88	-0.7
2,588,519	-		Psyr_2226	0.88	-0.2
2,588,736	+				-0.2
2,588,736	+				-1.4
2,588,736	+				+1.5
2,588,736	+				-0.2
2,588,737	-				-0.3
2,588,737	-				+0.1
2,588,737	-				+0.7
2,588,889	-				+0.6
2,588,889	-				-1.0
2,588,918	-				-0.5
2,588,918	-				+1.6
2,588,918	-				-0.4
2,588,967	-		Psyr_2227	0.11	-0.4
2,588,987	+		Psyr_2227	0.16	-1.6
2,589,282	+		Psyr_2227	0.80	-0.7
2,589,332	+				-0.8
2,589,332	+				+0.2
2,589,409	+				+0.3
2,589,410	-				+0.8
2,589,418	+				+0.3
2,589,443	+				+0.0
2,589,453	+				+0.2
2,589,453	+				+0.8
2,589,453	+				+1.0
2,589,453	+				-1.6
2,589,454	-				+1.8
2,589,454	-				-0.5
2,589,457	+				-1.0
2,589,457	+				-0.6
2,589,474	+				-1.1
2,589,477	-				-0.3
2,589,521	+				-0.6
2,589,521	+				-0.9
2,589,522	-				+0.4
2,589,522	-				+0.0
2,589,522	-				+0.6
2,589,728	+				-1.0
2,589,729	-				+0.7
2,589,729	-				-0.5
2,590,111	+		Psyr_2228	0.47	+1.9
2,590,112	-		Psyr_2228	0.47	-0.4
2,590,112	-		Psyr_2228	0.47	+1.6
2,590,112	-		Psyr_2228	0.47	+0.1
2,590,112	-		Psyr_2228	0.47	-1.2
2,590,126	+		Psyr_2228	0.49	-0.4
2,590,126	+		Psyr_2228	0.49	+1.6
2,590,127	-		Psyr_2228	0.49	+0.9
2,590,136	+		Psyr_2228	0.50	-0.4
2,590,136	+		Psyr_2228	0.50	-0.7
2,590,137	-		Psyr_2228	0.50	+3.5
2,590,137	-		Psyr_2228	0.50	+1.0
2,590,325	-		Psyr_2228	0.76	-0.2