Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2192

Experiment: KB with Avocatin B 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin B 10 mM
2,547,019	+		Psyr_2191	0.52	+0.2
2,547,020	-		Psyr_2191	0.52	+0.2
2,547,114	+		Psyr_2191	0.58	+0.6
2,547,114	+		Psyr_2191	0.58	-0.3
2,547,167	+		Psyr_2191	0.62	-2.6
2,547,167	+		Psyr_2191	0.62	-0.6
2,547,167	+		Psyr_2191	0.62	-0.1
2,547,168	-		Psyr_2191	0.62	+0.5
2,547,168	-		Psyr_2191	0.62	-1.3
2,547,168	-		Psyr_2191	0.62	-0.5
2,547,168	-		Psyr_2191	0.62	-0.2
2,547,168	-		Psyr_2191	0.62	+0.3
2,547,168	-		Psyr_2191	0.62	-0.1
2,547,168	-		Psyr_2191	0.62	+0.9
2,547,168	-		Psyr_2191	0.62	+0.8
2,547,168	-		Psyr_2191	0.62	-0.2
2,547,168	-		Psyr_2191	0.62	-0.4
2,547,314	+		Psyr_2191	0.72	+0.4
2,547,592	-				-0.2
2,547,703	+				-0.2
2,547,703	+				-0.4
2,547,703	+				-0.8
2,547,703	+				+2.2
2,547,704	-				+2.3
2,547,707	+				-2.7
2,547,707	+				-0.2
2,547,707	+				-1.0
2,547,707	+				-0.2
2,547,707	+				-0.2
2,547,707	+				-0.5
2,547,707	+				+1.1
2,547,707	+				-0.4
2,547,708	-				+0.8
2,547,708	-				-0.3
2,547,708	-				-0.3
2,547,708	-				+0.4
2,547,708	-				-0.8
2,547,712	-				+2.4
2,547,712	-				-0.0
2,547,712	-				-0.2
2,547,798	+				-1.3
2,547,799	-				+0.8
2,547,799	-				+0.8
2,547,799	-				+0.4
2,547,799	-				+2.1
2,547,799	-				+1.0
2,547,802	+				+0.8
2,547,802	+				-0.9
2,547,802	+				-0.3
2,547,803	-				+1.1
2,547,803	-				+0.9
2,547,803	-				+2.4
2,547,803	-				-0.3
2,547,970	+		Psyr_2192	0.25	+1.0
2,547,970	+		Psyr_2192	0.25	+2.4
2,547,970	+		Psyr_2192	0.25	+1.8
2,547,970	+		Psyr_2192	0.25	+0.1
2,547,971	-		Psyr_2192	0.26	+1.8
2,547,971	-		Psyr_2192	0.26	+1.7
2,547,971	-		Psyr_2192	0.26	+1.2
2,547,976	+		Psyr_2192	0.26	+0.9
2,547,976	+		Psyr_2192	0.26	+2.0
2,547,976	+		Psyr_2192	0.26	+1.1
2,547,976	+		Psyr_2192	0.26	+0.5
2,547,977	-		Psyr_2192	0.27	+0.6
2,548,159	+		Psyr_2192	0.56	+1.5
2,548,159	+		Psyr_2192	0.56	+2.6
2,548,166	+		Psyr_2192	0.57	+0.7
2,548,334	-		Psyr_2192	0.85	+1.1
2,548,334	-		Psyr_2192	0.85	-0.0
2,548,334	-		Psyr_2192	0.85	-0.1
2,548,334	-		Psyr_2192	0.85	+1.0
2,548,357	+		Psyr_2192	0.88	-1.2
2,548,358	-		Psyr_2192	0.88	+0.3
2,548,358	-		Psyr_2192	0.88	-0.1
2,548,496	-				-1.6
2,548,543	+				+0.6
2,548,598	+				+0.8
2,549,191	-		Psyr_2193	0.62	+0.7
2,549,191	-		Psyr_2193	0.62	+1.6
2,549,262	-		Psyr_2193	0.68	+0.8
2,549,277	+		Psyr_2193	0.70	-0.6
2,549,277	+				+1.7
2,549,278	-		Psyr_2193	0.70	+0.6
2,549,278	-		Psyr_2193	0.70	-1.3
2,549,278	-		Psyr_2193	0.70	+0.8
2,549,278	-		Psyr_2193	0.70	+2.2
2,549,278	-		Psyr_2193	0.70	-0.6
2,549,278	-		Psyr_2193	0.70	-1.2