Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1864

Experiment: KB with Avocatin B 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin B 10 mM
2,138,859	+		Psyr_1862	0.85	+0.8
2,138,859	+		Psyr_1862	0.85	-0.2
2,138,859	+		Psyr_1862	0.85	-0.4
2,138,859	+		Psyr_1862	0.85	+0.1
2,138,859	+		Psyr_1862	0.85	-1.1
2,138,860	-		Psyr_1862	0.85	+0.5
2,138,860	-		Psyr_1862	0.85	+1.5
2,138,860	-		Psyr_1862	0.85	-0.1
2,138,860	-		Psyr_1862	0.85	-0.1
2,138,930	+				-1.7
2,139,011	+				-0.0
2,139,020	-				-1.3
2,139,048	+				+1.2
2,139,048	+				+3.2
2,139,049	-				+1.3
2,139,050	+				-0.5
2,139,051	-				-0.9
2,139,051	-				+0.9
2,139,080	+				+0.5
2,139,080	+				-1.5
2,139,080	+				-0.5
2,139,080	+				+0.3
2,139,080	+				+2.5
2,139,080	+				+0.1
2,139,081	-				+0.4
2,139,081	-				-1.0
2,139,081	-				+0.1
2,139,081	-				+0.4
2,139,082	+				-1.1
2,139,082	+				+0.4
2,139,082	+				-0.1
2,139,082	+				+0.0
2,139,082	+				+0.3
2,139,083	-				-0.1
2,139,083	-				+1.4
2,139,083	-				-0.7
2,139,083	-				-0.5
2,139,124	-				+0.3
2,139,124	-				+0.1
2,139,165	+				-0.5
2,139,165	+				-1.4
2,139,165	+				-1.9
2,139,165	+				-1.0
2,139,166	-				+1.0
2,139,166	-				+2.6
2,139,166	-				+0.6
2,139,166	-				+0.9
2,139,338	+				-0.4
2,139,338	+				-0.7
2,139,338	+				-0.2
2,139,338	+				-0.1
2,139,338	+				-0.2
2,139,338	+				+0.4
2,139,338	+				-0.7
2,139,339	-				+0.5
2,139,339	-				+0.9
2,139,339	-				+0.1
2,139,339	-				+1.9
2,139,339	-				-0.2
2,139,339	-				+0.4
2,139,349	+				+0.6
2,139,349	+				+0.6
2,139,349	+				-1.7
2,139,349	+				-0.4
2,139,349	+				-0.4
2,139,349	+				+0.6
2,139,349	+				-0.6
2,139,350	-				+0.2
2,139,358	-				-0.7
2,139,382	-				+0.1
2,139,453	+				+0.9
2,139,454	-				-0.2
2,139,483	+				-0.6
2,139,483	+				-0.1
2,139,484	-				-0.2
2,139,573	+				-0.1
2,139,573	+				-0.1
2,139,573	+				-1.3
2,139,574	-				+0.6
2,139,574	-				-1.2
2,139,622	+				-3.6
2,139,622	+				-0.3
2,139,623	-				-1.9
2,139,626	+				-0.8
2,139,626	+				+0.1
2,139,627	-				-2.9
2,139,726	+		Psyr_1864	0.21	-2.3
2,139,726	+		Psyr_1864	0.21	-2.4
2,139,848	+		Psyr_1864	0.35	-1.6
2,139,848	+		Psyr_1864	0.35	-1.3
2,139,848	+		Psyr_1864	0.35	+0.4
2,139,848	+		Psyr_1864	0.35	-1.5
2,139,849	-		Psyr_1864	0.35	-0.3
2,139,897	+		Psyr_1864	0.40	-3.9
2,140,195	-		Psyr_1864	0.75	-0.9
2,140,215	+		Psyr_1864	0.77	-0.7
2,140,215	+		Psyr_1864	0.77	+2.5
2,140,215	+		Psyr_1864	0.77	-0.5
2,140,216	-		Psyr_1864	0.77	-1.5
2,140,216	-		Psyr_1864	0.77	-1.9
2,140,216	-		Psyr_1864	0.77	+0.9
2,140,327	-				+1.5
2,140,329	+				+0.9
2,140,330	-				+0.5
2,140,371	+				-2.5
2,140,371	+				-0.6
2,140,371	+				+1.9
2,140,372	-				-2.1
2,140,372	-				-1.6
2,140,372	-				-2.0
2,140,464	+				-0.6
2,140,465	-				+1.0
2,140,465	-				+0.8
2,140,466	+				-1.1
2,140,467	-				+0.1
2,140,467	-				+0.5
2,140,474	+				+0.2
2,140,580	+				+1.1
2,140,580	+				-1.1
2,140,580	+				-0.5
2,140,581	-				-0.5
2,140,581	-				+3.7
2,140,581	-				+1.2
2,140,583	+				-0.7
2,140,584	-				+0.4
2,140,644	-				-0.9
2,140,644	-				+0.9
2,140,745	+				+1.1
2,140,745	+				+1.1
2,140,746	-				-1.7
2,140,746	-				+0.3
2,140,781	+				-1.0
2,140,781	+				-0.9
2,140,781	+				-1.9
2,140,781	+				-1.4
2,140,782	-				+1.3
2,140,782	-				-0.6
2,140,782	-				+1.2
2,140,782	-				+0.6
2,140,811	+				+0.3
2,140,811	+				+0.9
2,140,812	-				-0.5
2,140,812	-				-1.1
2,140,812	-				+1.9
2,140,901	+		Psyr_1865	0.11	+0.1
2,140,901	+		Psyr_1865	0.11	+0.3
2,140,901	+		Psyr_1865	0.11	+0.1
2,140,901	+		Psyr_1865	0.11	+0.1
2,140,901	+		Psyr_1865	0.11	-0.7
2,140,901	+		Psyr_1865	0.11	+1.0
2,140,901	+		Psyr_1865	0.11	+0.0
2,140,901	+		Psyr_1865	0.11	-2.0
2,140,901	+		Psyr_1865	0.11	+1.5
2,140,902	-		Psyr_1865	0.11	+2.5
2,140,902	-		Psyr_1865	0.11	+0.9
2,140,902	-		Psyr_1865	0.11	-0.7
2,140,902	-		Psyr_1865	0.11	-0.5
2,140,902	-		Psyr_1865	0.11	-0.1
2,140,902	-		Psyr_1865	0.11	+1.6
2,140,902	-		Psyr_1865	0.11	+1.0
2,140,902	-		Psyr_1865	0.11	-0.9
2,140,902	-		Psyr_1865	0.11	+2.9
2,140,902	-		Psyr_1865	0.11	-0.7
2,140,902	-		Psyr_1865	0.11	+0.6
2,141,031	-		Psyr_1865	0.17	+0.7
2,141,031	-		Psyr_1865	0.17	-0.1
2,141,072	+		Psyr_1865	0.19	+0.1
2,141,104	+		Psyr_1865	0.21	+0.6
2,141,105	-		Psyr_1865	0.21	+0.2
2,141,277	+		Psyr_1865	0.29	+0.0
2,141,360	+		Psyr_1865	0.33	-0.4
2,141,361	-		Psyr_1865	0.33	-0.3