Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1567

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1565 and Psyr_1566 are separated by 66 nucleotidesPsyr_1566 and Psyr_1567 are separated by 210 nucleotidesPsyr_1567 and Psyr_1568 are separated by 4 nucleotidesPsyr_1568 and Psyr_1569 are separated by 105 nucleotides Psyr_1565: Psyr_1565 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein, at 1,761,509 to 1,762,441 _1565 Psyr_1566: Psyr_1566 - Nitroreductase, at 1,762,508 to 1,763,101 _1566 Psyr_1567: Psyr_1567 - Uncharacterized conserved protein UCP006173, at 1,763,312 to 1,763,761 _1567 Psyr_1568: Psyr_1568 - conserved hypothetical protein, at 1,763,766 to 1,764,146 _1568 Psyr_1569: Psyr_1569 - conserved hypothetical protein, at 1,764,252 to 1,764,752 _1569 Position (kb) 1763 1764Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1762.510 kb on - strandat 1762.584 kb on + strand, within Psyr_1566at 1762.584 kb on + strand, within Psyr_1566at 1762.657 kb on + strand, within Psyr_1566at 1762.658 kb on - strand, within Psyr_1566at 1762.743 kb on + strand, within Psyr_1566at 1762.897 kb on - strand, within Psyr_1566at 1762.929 kb on + strand, within Psyr_1566at 1762.929 kb on + strand, within Psyr_1566at 1762.930 kb on - strand, within Psyr_1566at 1762.930 kb on - strand, within Psyr_1566at 1762.954 kb on + strand, within Psyr_1566at 1762.956 kb on + strand, within Psyr_1566at 1762.956 kb on + strand, within Psyr_1566at 1762.956 kb on + strand, within Psyr_1566at 1762.957 kb on - strand, within Psyr_1566at 1762.957 kb on - strand, within Psyr_1566at 1763.196 kb on - strandat 1763.264 kb on + strandat 1763.264 kb on + strandat 1763.265 kb on - strandat 1763.270 kb on + strandat 1763.271 kb on - strandat 1763.447 kb on + strand, within Psyr_1567at 1763.450 kb on + strand, within Psyr_1567at 1763.450 kb on + strand, within Psyr_1567at 1763.450 kb on + strand, within Psyr_1567at 1763.450 kb on + strand, within Psyr_1567at 1763.677 kb on + strand, within Psyr_1567at 1763.677 kb on + strand, within Psyr_1567at 1763.677 kb on + strand, within Psyr_1567at 1763.738 kb on + strandat 1763.739 kb on - strandat 1763.767 kb on + strandat 1763.767 kb on + strandat 1763.767 kb on + strandat 1763.768 kb on - strandat 1763.768 kb on - strandat 1763.768 kb on - strandat 1764.164 kb on + strandat 1764.164 kb on + strandat 1764.164 kb on + strandat 1764.164 kb on + strandat 1764.165 kb on - strandat 1764.165 kb on - strandat 1764.165 kb on - strandat 1764.167 kb on + strandat 1764.167 kb on + strandat 1764.167 kb on + strandat 1764.167 kb on + strandat 1764.167 kb on + strandat 1764.167 kb on + strandat 1764.167 kb on + strandat 1764.167 kb on + strandat 1764.168 kb on - strandat 1764.168 kb on - strandat 1764.168 kb on - strandat 1764.168 kb on - strandat 1764.168 kb on - strandat 1764.314 kb on + strand, within Psyr_1569at 1764.335 kb on - strand, within Psyr_1569at 1764.335 kb on - strand, within Psyr_1569at 1764.387 kb on - strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.452 kb on + strand, within Psyr_1569at 1764.453 kb on - strand, within Psyr_1569at 1764.453 kb on - strand, within Psyr_1569at 1764.453 kb on - strand, within Psyr_1569at 1764.454 kb on + strand, within Psyr_1569at 1764.454 kb on + strandat 1764.454 kb on + strand, within Psyr_1569at 1764.454 kb on + strand, within Psyr_1569at 1764.454 kb on + strand, within Psyr_1569at 1764.454 kb on + strand, within Psyr_1569at 1764.454 kb on + strand, within Psyr_1569at 1764.455 kb on - strand, within Psyr_1569at 1764.455 kb on - strand, within Psyr_1569at 1764.455 kb on - strand, within Psyr_1569at 1764.455 kb on - strand, within Psyr_1569at 1764.455 kb on - strand, within Psyr_1569at 1764.478 kb on + strand, within Psyr_1569at 1764.479 kb on - strand, within Psyr_1569at 1764.643 kb on + strand, within Psyr_1569at 1764.643 kb on + strand, within Psyr_1569at 1764.643 kb on + strand, within Psyr_1569at 1764.643 kb on + strand, within Psyr_1569at 1764.643 kb on + strand, within Psyr_1569at 1764.643 kb on + strand, within Psyr_1569at 1764.643 kb on + strand, within Psyr_1569at 1764.644 kb on - strand, within Psyr_1569at 1764.644 kb on - strand, within Psyr_1569at 1764.644 kb on - strand, within Psyr_1569at 1764.644 kb on - strand, within Psyr_1569at 1764.644 kb on - strand, within Psyr_1569at 1764.644 kb on - strand, within Psyr_1569at 1764.644 kb on - strand, within Psyr_1569at 1764.644 kb on - strand, within Psyr_1569at 1764.664 kb on + strand, within Psyr_1569at 1764.718 kb on + strandat 1764.718 kb on + strandat 1764.719 kb on - strandat 1764.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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1,762,510 - +0.7
1,762,584 + Psyr_1566 0.13 +0.6
1,762,584 + Psyr_1566 0.13 -0.4
1,762,657 + Psyr_1566 0.25 +1.2
1,762,658 - Psyr_1566 0.25 -0.7
1,762,743 + Psyr_1566 0.40 +0.1
1,762,897 - Psyr_1566 0.65 -1.6
1,762,929 + Psyr_1566 0.71 +0.3
1,762,929 + Psyr_1566 0.71 -0.2
1,762,930 - Psyr_1566 0.71 +3.3
1,762,930 - Psyr_1566 0.71 +0.0
1,762,954 + Psyr_1566 0.75 +0.3
1,762,956 + Psyr_1566 0.75 -0.3
1,762,956 + Psyr_1566 0.75 +0.0
1,762,956 + Psyr_1566 0.75 -0.3
1,762,957 - Psyr_1566 0.76 +0.0
1,762,957 - Psyr_1566 0.76 -1.2
1,763,196 - +0.2
1,763,264 + +0.0
1,763,264 + +2.8
1,763,265 - -0.4
1,763,270 + +0.0
1,763,271 - +0.2
1,763,447 + Psyr_1567 0.30 -0.4
1,763,450 + Psyr_1567 0.31 +0.4
1,763,450 + Psyr_1567 0.31 +1.0
1,763,450 + Psyr_1567 0.31 +1.4
1,763,450 + Psyr_1567 0.31 +0.9
1,763,677 + Psyr_1567 0.81 +0.4
1,763,677 + Psyr_1567 0.81 +1.0
1,763,677 + Psyr_1567 0.81 -2.1
1,763,738 + +0.7
1,763,739 - +0.0
1,763,767 + -1.4
1,763,767 + -1.2
1,763,767 + -0.6
1,763,768 - +0.7
1,763,768 - -0.5
1,763,768 - -0.0
1,764,164 + +0.3
1,764,164 + +1.2
1,764,164 + -1.4
1,764,164 + +2.6
1,764,165 - +0.2
1,764,165 - -0.0
1,764,165 - +0.9
1,764,167 + -0.0
1,764,167 + +0.8
1,764,167 + -0.6
1,764,167 + +1.3
1,764,167 + +0.1
1,764,167 + -0.2
1,764,167 + -0.0
1,764,167 + -0.7
1,764,168 - -0.4
1,764,168 - +0.7
1,764,168 - -0.2
1,764,168 - -0.2
1,764,168 - +0.4
1,764,314 + Psyr_1569 0.12 +0.3
1,764,335 - Psyr_1569 0.17 +3.3
1,764,335 - Psyr_1569 0.17 -0.3
1,764,387 - Psyr_1569 0.27 +1.0
1,764,388 + Psyr_1569 0.27 +1.0
1,764,388 + Psyr_1569 0.27 -0.4
1,764,388 + Psyr_1569 0.27 -0.2
1,764,388 + Psyr_1569 0.27 +0.3
1,764,388 + Psyr_1569 0.27 -1.1
1,764,388 + Psyr_1569 0.27 +0.4
1,764,389 - Psyr_1569 0.27 +2.0
1,764,389 - Psyr_1569 0.27 -0.1
1,764,389 - Psyr_1569 0.27 -0.5
1,764,389 - Psyr_1569 0.27 -0.3
1,764,389 - Psyr_1569 0.27 +1.8
1,764,389 - Psyr_1569 0.27 -2.2
1,764,389 - Psyr_1569 0.27 -0.1
1,764,389 - Psyr_1569 0.27 +0.6
1,764,389 - Psyr_1569 0.27 -1.2
1,764,389 - Psyr_1569 0.27 +0.0
1,764,452 + Psyr_1569 0.40 +0.1
1,764,453 - Psyr_1569 0.40 +0.8
1,764,453 - Psyr_1569 0.40 +0.5
1,764,453 - Psyr_1569 0.40 +0.0
1,764,454 + Psyr_1569 0.40 +1.3
1,764,454 + -1.6
1,764,454 + Psyr_1569 0.40 +0.0
1,764,454 + Psyr_1569 0.40 +2.2
1,764,454 + Psyr_1569 0.40 +0.2
1,764,454 + Psyr_1569 0.40 +0.6
1,764,454 + Psyr_1569 0.40 -0.3
1,764,455 - Psyr_1569 0.41 -0.8
1,764,455 - Psyr_1569 0.41 +0.0
1,764,455 - Psyr_1569 0.41 +0.4
1,764,455 - Psyr_1569 0.41 +1.0
1,764,455 - Psyr_1569 0.41 -1.3
1,764,478 + Psyr_1569 0.45 +0.7
1,764,479 - Psyr_1569 0.45 +0.9
1,764,643 + Psyr_1569 0.78 +1.9
1,764,643 + Psyr_1569 0.78 +0.3
1,764,643 + Psyr_1569 0.78 +1.0
1,764,643 + Psyr_1569 0.78 -0.0
1,764,643 + Psyr_1569 0.78 +0.6
1,764,643 + Psyr_1569 0.78 -1.2
1,764,643 + Psyr_1569 0.78 -0.4
1,764,644 - Psyr_1569 0.78 +0.0
1,764,644 - Psyr_1569 0.78 +1.9
1,764,644 - Psyr_1569 0.78 -0.2
1,764,644 - Psyr_1569 0.78 -0.6
1,764,644 - Psyr_1569 0.78 -1.0
1,764,644 - Psyr_1569 0.78 +0.0
1,764,644 - Psyr_1569 0.78 -0.6
1,764,644 - Psyr_1569 0.78 -1.1
1,764,664 + Psyr_1569 0.82 +1.0
1,764,718 + -0.3
1,764,718 + +0.2
1,764,719 - +2.0
1,764,719 - -0.6

Or see this region's nucleotide sequence