Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1388 and Psyr_1389 are separated by 10 nucleotides Psyr_1389 and Psyr_1390 are separated by 79 nucleotides Psyr_1390 and Psyr_1391 are separated by 92 nucleotides Psyr_1391 and Psyr_1392 are separated by 102 nucleotides
Psyr_1388: Psyr_1388 - Protein of unknown function UPF0066, at 1,570,005 to 1,570,697
_1388
Psyr_1389: Psyr_1389 - Protein of unknown function DUF1456, at 1,570,708 to 1,571,169
_1389
Psyr_1390: Psyr_1390 - RNA-binding S4, at 1,571,249 to 1,571,959
_1390
Psyr_1391: Psyr_1391 - GCN5-related N-acetyltransferase, at 1,572,052 to 1,572,492
_1391
Psyr_1392: Psyr_1392 - SSU ribosomal protein S12P methylthiotransferase, at 1,572,595 to 1,573,938
_1392
Position (kb) 1571
1572 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1570.300 kb on + strand, within Psyr_1388 at 1570.300 kb on + strand, within Psyr_1388 at 1570.300 kb on + strand, within Psyr_1388 at 1570.300 kb on + strand, within Psyr_1388 at 1570.300 kb on + strand, within Psyr_1388 at 1570.300 kb on + strand, within Psyr_1388 at 1570.301 kb on - strand, within Psyr_1388 at 1570.301 kb on - strand, within Psyr_1388 at 1570.301 kb on - strand, within Psyr_1388 at 1570.301 kb on - strand, within Psyr_1388 at 1570.301 kb on - strand, within Psyr_1388 at 1570.690 kb on + strand at 1570.690 kb on + strand at 1570.690 kb on + strand at 1570.690 kb on + strand at 1570.690 kb on + strand at 1570.690 kb on + strand at 1570.691 kb on - strand at 1570.691 kb on - strand at 1570.691 kb on - strand at 1570.691 kb on - strand at 1570.691 kb on - strand at 1570.691 kb on - strand at 1570.691 kb on - strand at 1570.775 kb on + strand, within Psyr_1389 at 1570.909 kb on - strand, within Psyr_1389 at 1570.974 kb on - strand, within Psyr_1389 at 1570.974 kb on - strand, within Psyr_1389 at 1570.974 kb on - strand, within Psyr_1389 at 1570.974 kb on - strand, within Psyr_1389 at 1570.974 kb on - strand, within Psyr_1389 at 1571.024 kb on + strand, within Psyr_1389 at 1571.024 kb on + strand, within Psyr_1389 at 1571.135 kb on + strand at 1571.135 kb on + strand at 1571.136 kb on - strand at 1571.136 kb on - strand at 1571.136 kb on - strand at 1571.152 kb on + strand at 1571.152 kb on + strand at 1571.152 kb on + strand at 1571.152 kb on + strand at 1571.152 kb on + strand at 1571.152 kb on + strand at 1571.153 kb on - strand at 1571.153 kb on - strand at 1571.153 kb on - strand at 1571.186 kb on + strand at 1571.186 kb on + strand at 1571.186 kb on + strand at 1571.186 kb on + strand at 1571.187 kb on - strand at 1571.226 kb on + strand at 1571.227 kb on - strand at 1571.227 kb on - strand at 1571.227 kb on - strand at 1571.229 kb on + strand at 1571.229 kb on + strand at 1571.230 kb on - strand at 1571.274 kb on + strand at 1571.275 kb on - strand at 1571.275 kb on - strand at 1571.466 kb on + strand, within Psyr_1390 at 1571.466 kb on + strand, within Psyr_1390 at 1571.466 kb on + strand, within Psyr_1390 at 1571.466 kb on + strand, within Psyr_1390 at 1571.466 kb on + strand, within Psyr_1390 at 1571.467 kb on - strand, within Psyr_1390 at 1571.467 kb on - strand, within Psyr_1390 at 1571.467 kb on - strand, within Psyr_1390 at 1571.532 kb on + strand, within Psyr_1390 at 1571.532 kb on + strand, within Psyr_1390 at 1571.532 kb on + strand, within Psyr_1390 at 1571.532 kb on + strand, within Psyr_1390 at 1571.533 kb on - strand, within Psyr_1390 at 1571.533 kb on - strand, within Psyr_1390 at 1571.533 kb on - strand, within Psyr_1390 at 1571.533 kb on - strand, within Psyr_1390 at 1571.679 kb on + strand, within Psyr_1390 at 1571.680 kb on - strand, within Psyr_1390 at 1571.680 kb on - strand, within Psyr_1390 at 1571.691 kb on - strand, within Psyr_1390 at 1571.978 kb on + strand at 1571.978 kb on + strand at 1571.998 kb on - strand at 1572.336 kb on + strand, within Psyr_1391 at 1572.336 kb on + strand, within Psyr_1391 at 1572.336 kb on + strand, within Psyr_1391 at 1572.337 kb on - strand, within Psyr_1391 at 1572.337 kb on - strand, within Psyr_1391 at 1572.362 kb on + strand, within Psyr_1391 at 1572.362 kb on + strand, within Psyr_1391 at 1572.395 kb on + strand, within Psyr_1391 at 1572.395 kb on + strand, within Psyr_1391 at 1572.395 kb on + strand, within Psyr_1391 at 1572.395 kb on + strand, within Psyr_1391 at 1572.395 kb on + strand, within Psyr_1391 at 1572.395 kb on + strand, within Psyr_1391 at 1572.396 kb on - strand, within Psyr_1391 at 1572.396 kb on - strand, within Psyr_1391 at 1572.396 kb on - strand, within Psyr_1391 at 1572.442 kb on + strand, within Psyr_1391 at 1572.442 kb on + strand, within Psyr_1391 at 1572.482 kb on + strand at 1572.482 kb on + strand at 1572.482 kb on + strand at 1572.482 kb on + strand at 1572.482 kb on + strand at 1572.482 kb on + strand at 1572.482 kb on + strand at 1572.483 kb on - strand at 1572.483 kb on - strand at 1572.483 kb on - strand at 1572.483 kb on - strand at 1572.483 kb on - strand at 1572.483 kb on - strand at 1572.483 kb on - strand at 1572.483 kb on - strand at 1572.484 kb on + strand at 1572.484 kb on + strand at 1572.484 kb on + strand at 1572.484 kb on + strand at 1572.484 kb on + strand at 1572.484 kb on + strand at 1572.484 kb on + strand at 1572.484 kb on + strand at 1572.484 kb on + strand at 1572.484 kb on + strand at 1572.484 kb on + strand at 1572.485 kb on - strand at 1572.485 kb on - strand at 1572.485 kb on - strand at 1572.485 kb on - strand at 1572.485 kb on - strand at 1572.508 kb on - strand at 1572.596 kb on + strand at 1572.597 kb on - strand at 1572.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 1,570,300 + Psyr_1388 0.43 +0.7 1,570,300 + Psyr_1388 0.43 -0.3 1,570,300 + Psyr_1388 0.43 -0.1 1,570,300 + Psyr_1388 0.43 +0.0 1,570,300 + Psyr_1388 0.43 +1.6 1,570,300 + Psyr_1388 0.43 +1.4 1,570,301 - Psyr_1388 0.43 +0.7 1,570,301 - Psyr_1388 0.43 +0.2 1,570,301 - Psyr_1388 0.43 +1.3 1,570,301 - Psyr_1388 0.43 -0.6 1,570,301 - Psyr_1388 0.43 +0.1 1,570,690 + +0.5 1,570,690 + +1.6 1,570,690 + -0.8 1,570,690 + +1.6 1,570,690 + -0.1 1,570,690 + +0.1 1,570,691 - +0.1 1,570,691 - -0.2 1,570,691 - -0.2 1,570,691 - -1.1 1,570,691 - -0.5 1,570,691 - -0.9 1,570,691 - -1.0 1,570,775 + Psyr_1389 0.15 -0.1 1,570,909 - Psyr_1389 0.44 -0.0 1,570,974 - Psyr_1389 0.58 +2.0 1,570,974 - Psyr_1389 0.58 -0.7 1,570,974 - Psyr_1389 0.58 +0.6 1,570,974 - Psyr_1389 0.58 +1.9 1,570,974 - Psyr_1389 0.58 +1.1 1,571,024 + Psyr_1389 0.68 +0.1 1,571,024 + Psyr_1389 0.68 +1.3 1,571,135 + +0.6 1,571,135 + +1.0 1,571,136 - +1.0 1,571,136 - +2.3 1,571,136 - +1.6 1,571,152 + +0.5 1,571,152 + -0.3 1,571,152 + -1.6 1,571,152 + +0.7 1,571,152 + +1.8 1,571,152 + -0.0 1,571,153 - +0.2 1,571,153 - -1.4 1,571,153 - -1.7 1,571,186 + +2.0 1,571,186 + -0.9 1,571,186 + -0.7 1,571,186 + -0.1 1,571,187 - -0.2 1,571,226 + +0.8 1,571,227 - -0.3 1,571,227 - -0.1 1,571,227 - -1.3 1,571,229 + -0.2 1,571,229 + -0.9 1,571,230 - +0.8 1,571,274 + +0.4 1,571,275 - +0.2 1,571,275 - +0.3 1,571,466 + Psyr_1390 0.31 -1.1 1,571,466 + Psyr_1390 0.31 +0.2 1,571,466 + Psyr_1390 0.31 -0.1 1,571,466 + Psyr_1390 0.31 +2.3 1,571,466 + Psyr_1390 0.31 +0.3 1,571,467 - Psyr_1390 0.31 +1.6 1,571,467 - Psyr_1390 0.31 -0.8 1,571,467 - Psyr_1390 0.31 +0.2 1,571,532 + Psyr_1390 0.40 +2.0 1,571,532 + Psyr_1390 0.40 +0.3 1,571,532 + Psyr_1390 0.40 -0.6 1,571,532 + Psyr_1390 0.40 -1.4 1,571,533 - Psyr_1390 0.40 +0.4 1,571,533 - Psyr_1390 0.40 -0.4 1,571,533 - Psyr_1390 0.40 -0.2 1,571,533 - Psyr_1390 0.40 +0.1 1,571,679 + Psyr_1390 0.60 -1.2 1,571,680 - Psyr_1390 0.61 +3.0 1,571,680 - Psyr_1390 0.61 +0.1 1,571,691 - Psyr_1390 0.62 -0.4 1,571,978 + +0.6 1,571,978 + +0.4 1,571,998 - +0.5 1,572,336 + Psyr_1391 0.64 +0.7 1,572,336 + Psyr_1391 0.64 +0.0 1,572,336 + Psyr_1391 0.64 +0.2 1,572,337 - Psyr_1391 0.65 -0.5 1,572,337 - Psyr_1391 0.65 +0.7 1,572,362 + Psyr_1391 0.70 +0.4 1,572,362 + Psyr_1391 0.70 -1.2 1,572,395 + Psyr_1391 0.78 +0.5 1,572,395 + Psyr_1391 0.78 -0.1 1,572,395 + Psyr_1391 0.78 +1.5 1,572,395 + Psyr_1391 0.78 -0.6 1,572,395 + Psyr_1391 0.78 -0.8 1,572,395 + Psyr_1391 0.78 +0.0 1,572,396 - Psyr_1391 0.78 +0.4 1,572,396 - Psyr_1391 0.78 +0.1 1,572,396 - Psyr_1391 0.78 +0.0 1,572,442 + Psyr_1391 0.88 +0.6 1,572,442 + Psyr_1391 0.88 +0.3 1,572,482 + -0.2 1,572,482 + +1.1 1,572,482 + +0.4 1,572,482 + -2.5 1,572,482 + -0.8 1,572,482 + +0.2 1,572,482 + +0.7 1,572,483 - +0.0 1,572,483 - -0.1 1,572,483 - -0.1 1,572,483 - -0.0 1,572,483 - +0.8 1,572,483 - +0.0 1,572,483 - +0.4 1,572,483 - -2.0 1,572,484 + -1.3 1,572,484 + -0.0 1,572,484 + -0.4 1,572,484 + +0.4 1,572,484 + -0.2 1,572,484 + +0.9 1,572,484 + +0.7 1,572,484 + +0.3 1,572,484 + -0.5 1,572,484 + +0.2 1,572,484 + +0.2 1,572,485 - +0.2 1,572,485 - -1.4 1,572,485 - +1.2 1,572,485 - +0.1 1,572,485 - -0.8 1,572,508 - -0.5 1,572,596 + +1.4 1,572,597 - -1.1 1,572,621 - -1.2
Or see this region's nucleotide sequence