Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1372

Experiment: KB with Avocatin B 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1370 and Psyr_1371 overlap by 13 nucleotidesPsyr_1371 and Psyr_1372 overlap by 1 nucleotidesPsyr_1372 and Psyr_1373 are separated by 208 nucleotides Psyr_1370: Psyr_1370 - tRNA pseudouridine synthase D, TruD, at 1,553,050 to 1,554,108 _1370 Psyr_1371: Psyr_1371 - 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase, at 1,554,096 to 1,554,845 _1371 Psyr_1372: Psyr_1372 - Protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 1,554,845 to 1,555,522 _1372 Psyr_1373: Psyr_1373 - Peptidoglycan-binding LysM:Peptidase M23B, at 1,555,731 to 1,556,597 _1373 Position (kb) 1554 1555 1556Strain fitness (log2 ratio) -3 -2 -1 0 1at 1553.877 kb on + strand, within Psyr_1370at 1553.877 kb on + strand, within Psyr_1370at 1553.877 kb on + strand, within Psyr_1370at 1553.877 kb on + strand, within Psyr_1370at 1553.878 kb on - strand, within Psyr_1370at 1554.101 kb on + strandat 1554.102 kb on - strandat 1554.328 kb on + strand, within Psyr_1371at 1554.394 kb on + strand, within Psyr_1371at 1554.394 kb on + strand, within Psyr_1371at 1554.394 kb on + strand, within Psyr_1371at 1554.394 kb on + strand, within Psyr_1371at 1554.394 kb on + strand, within Psyr_1371at 1554.394 kb on + strand, within Psyr_1371at 1554.394 kb on + strand, within Psyr_1371at 1554.394 kb on + strand, within Psyr_1371at 1554.394 kb on + strand, within Psyr_1371at 1554.394 kb on + strand, within Psyr_1371at 1554.394 kb on + strand, within Psyr_1371at 1554.394 kb on + strand, within Psyr_1371at 1554.394 kb on + strand, within Psyr_1371at 1554.395 kb on - strand, within Psyr_1371at 1554.395 kb on - strand, within Psyr_1371at 1554.395 kb on - strand, within Psyr_1371at 1554.395 kb on - strand, within Psyr_1371at 1554.395 kb on - strand, within Psyr_1371at 1554.395 kb on - strand, within Psyr_1371at 1554.395 kb on - strand, within Psyr_1371at 1554.395 kb on - strand, within Psyr_1371at 1554.395 kb on - strand, within Psyr_1371at 1554.395 kb on - strand, within Psyr_1371at 1554.400 kb on - strand, within Psyr_1371at 1554.486 kb on - strand, within Psyr_1371at 1554.508 kb on - strand, within Psyr_1371at 1554.575 kb on + strand, within Psyr_1371at 1554.575 kb on + strand, within Psyr_1371at 1554.752 kb on - strand, within Psyr_1371at 1554.752 kb on - strand, within Psyr_1371at 1554.759 kb on + strand, within Psyr_1371at 1554.759 kb on + strand, within Psyr_1371at 1554.759 kb on + strand, within Psyr_1371at 1554.760 kb on - strand, within Psyr_1371at 1554.760 kb on - strand, within Psyr_1371at 1554.763 kb on + strand, within Psyr_1371at 1554.867 kb on + strandat 1554.868 kb on - strandat 1555.073 kb on + strand, within Psyr_1372at 1555.073 kb on + strand, within Psyr_1372at 1555.074 kb on - strand, within Psyr_1372at 1555.182 kb on + strand, within Psyr_1372at 1555.316 kb on + strand, within Psyr_1372at 1555.316 kb on + strand, within Psyr_1372at 1555.317 kb on - strand, within Psyr_1372at 1555.318 kb on + strand, within Psyr_1372at 1555.319 kb on - strand, within Psyr_1372at 1555.353 kb on + strand, within Psyr_1372at 1555.353 kb on + strand, within Psyr_1372at 1555.354 kb on - strand, within Psyr_1372at 1555.568 kb on + strandat 1555.568 kb on + strandat 1555.568 kb on + strandat 1555.569 kb on - strandat 1555.569 kb on - strandat 1555.569 kb on - strandat 1555.629 kb on + strandat 1555.629 kb on + strandat 1555.633 kb on + strandat 1555.634 kb on - strandat 1555.654 kb on + strandat 1555.655 kb on - strandat 1555.655 kb on - strandat 1555.674 kb on + strandat 1555.674 kb on + strandat 1555.674 kb on + strandat 1555.675 kb on - strandat 1555.675 kb on - strandat 1555.687 kb on + strandat 1555.687 kb on + strandat 1555.687 kb on + strandat 1555.688 kb on - strandat 1555.909 kb on - strand, within Psyr_1373at 1556.006 kb on + strand, within Psyr_1373at 1556.102 kb on + strand, within Psyr_1373at 1556.170 kb on + strand, within Psyr_1373at 1556.170 kb on + strand, within Psyr_1373at 1556.171 kb on - strand, within Psyr_1373at 1556.182 kb on + strand, within Psyr_1373at 1556.183 kb on - strand, within Psyr_1373at 1556.417 kb on + strand, within Psyr_1373at 1556.421 kb on + strand, within Psyr_1373

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
remove
1,553,877 + Psyr_1370 0.78 +0.5
1,553,877 + Psyr_1370 0.78 -0.4
1,553,877 + Psyr_1370 0.78 -0.9
1,553,877 + Psyr_1370 0.78 -0.2
1,553,878 - Psyr_1370 0.78 +0.0
1,554,101 + -0.2
1,554,102 - -3.6
1,554,328 + Psyr_1371 0.31 +0.5
1,554,394 + Psyr_1371 0.40 -0.8
1,554,394 + Psyr_1371 0.40 -0.8
1,554,394 + Psyr_1371 0.40 -3.2
1,554,394 + Psyr_1371 0.40 +0.0
1,554,394 + Psyr_1371 0.40 -0.2
1,554,394 + Psyr_1371 0.40 +0.7
1,554,394 + Psyr_1371 0.40 -0.6
1,554,394 + Psyr_1371 0.40 -1.4
1,554,394 + Psyr_1371 0.40 -1.3
1,554,394 + Psyr_1371 0.40 -1.6
1,554,394 + Psyr_1371 0.40 -1.5
1,554,394 + Psyr_1371 0.40 +0.2
1,554,394 + Psyr_1371 0.40 -2.6
1,554,395 - Psyr_1371 0.40 -2.0
1,554,395 - Psyr_1371 0.40 +0.0
1,554,395 - Psyr_1371 0.40 -1.0
1,554,395 - Psyr_1371 0.40 -3.2
1,554,395 - Psyr_1371 0.40 -2.2
1,554,395 - Psyr_1371 0.40 -0.8
1,554,395 - Psyr_1371 0.40 -2.6
1,554,395 - Psyr_1371 0.40 -0.3
1,554,395 - Psyr_1371 0.40 -0.7
1,554,395 - Psyr_1371 0.40 -1.6
1,554,400 - Psyr_1371 0.41 -1.4
1,554,486 - Psyr_1371 0.52 -2.2
1,554,508 - Psyr_1371 0.55 -1.2
1,554,575 + Psyr_1371 0.64 -0.7
1,554,575 + Psyr_1371 0.64 -1.2
1,554,752 - Psyr_1371 0.87 -2.9
1,554,752 - Psyr_1371 0.87 -1.3
1,554,759 + Psyr_1371 0.88 -0.9
1,554,759 + Psyr_1371 0.88 -1.6
1,554,759 + Psyr_1371 0.88 -0.9
1,554,760 - Psyr_1371 0.89 -3.1
1,554,760 - Psyr_1371 0.89 -1.9
1,554,763 + Psyr_1371 0.89 -0.8
1,554,867 + +1.4
1,554,868 - +0.2
1,555,073 + Psyr_1372 0.34 -0.5
1,555,073 + Psyr_1372 0.34 -0.6
1,555,074 - Psyr_1372 0.34 -0.8
1,555,182 + Psyr_1372 0.50 +0.0
1,555,316 + Psyr_1372 0.69 +0.6
1,555,316 + Psyr_1372 0.69 -1.4
1,555,317 - Psyr_1372 0.70 -2.6
1,555,318 + Psyr_1372 0.70 -1.6
1,555,319 - Psyr_1372 0.70 -0.2
1,555,353 + Psyr_1372 0.75 -0.4
1,555,353 + Psyr_1372 0.75 -0.8
1,555,354 - Psyr_1372 0.75 -1.0
1,555,568 + -0.8
1,555,568 + -0.5
1,555,568 + +0.1
1,555,569 - +0.0
1,555,569 - -1.6
1,555,569 - -0.5
1,555,629 + -2.0
1,555,629 + -1.0
1,555,633 + +0.6
1,555,634 - -0.2
1,555,654 + -1.1
1,555,655 - +0.9
1,555,655 - +0.4
1,555,674 + -0.7
1,555,674 + -1.1
1,555,674 + -0.1
1,555,675 - -1.4
1,555,675 - -0.5
1,555,687 + -2.4
1,555,687 + -1.5
1,555,687 + -0.4
1,555,688 - +1.4
1,555,909 - Psyr_1373 0.21 -2.6
1,556,006 + Psyr_1373 0.32 -3.3
1,556,102 + Psyr_1373 0.43 -3.6
1,556,170 + Psyr_1373 0.51 -2.7
1,556,170 + Psyr_1373 0.51 -1.6
1,556,171 - Psyr_1373 0.51 -1.0
1,556,182 + Psyr_1373 0.52 -0.6
1,556,183 - Psyr_1373 0.52 -1.6
1,556,417 + Psyr_1373 0.79 -1.4
1,556,421 + Psyr_1373 0.80 -3.5

Or see this region's nucleotide sequence