Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1146

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1145 and Psyr_1146 are separated by 255 nucleotidesPsyr_1146 and Psyr_1147 are separated by 38 nucleotidesPsyr_1147 and Psyr_1148 are separated by 151 nucleotides Psyr_1145: Psyr_1145 - Protoheme IX farnesyltransferase, at 1,296,293 to 1,297,180 _1145 Psyr_1146: Psyr_1146 - Glycosyl transferase, family 2, at 1,297,436 to 1,298,320 _1146 Psyr_1147: Psyr_1147 - Acetyltransferase (isoleucine patch superfamily)-like protein, at 1,298,359 to 1,299,000 _1147 Psyr_1148: Psyr_1148 - branched chain amino acid aminotransferase apoenzyme, at 1,299,152 to 1,300,171 _1148 Position (kb) 1297 1298 1299Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1297.169 kb on + strandat 1297.170 kb on - strandat 1297.170 kb on - strandat 1297.170 kb on - strandat 1297.203 kb on + strandat 1297.203 kb on + strandat 1297.248 kb on + strandat 1297.248 kb on + strandat 1297.248 kb on + strandat 1297.249 kb on - strandat 1297.249 kb on - strandat 1297.422 kb on + strandat 1297.422 kb on + strandat 1297.499 kb on + strandat 1297.499 kb on + strandat 1297.499 kb on + strandat 1297.499 kb on + strandat 1297.499 kb on + strandat 1297.500 kb on - strandat 1297.500 kb on - strandat 1297.500 kb on - strandat 1297.500 kb on - strandat 1297.500 kb on - strandat 1297.591 kb on + strand, within Psyr_1146at 1297.715 kb on + strand, within Psyr_1146at 1297.715 kb on + strand, within Psyr_1146at 1297.716 kb on - strand, within Psyr_1146at 1297.716 kb on - strand, within Psyr_1146at 1297.716 kb on - strand, within Psyr_1146at 1297.800 kb on + strand, within Psyr_1146at 1297.800 kb on + strand, within Psyr_1146at 1297.800 kb on + strand, within Psyr_1146at 1297.801 kb on - strand, within Psyr_1146at 1297.826 kb on + strand, within Psyr_1146at 1297.827 kb on - strand, within Psyr_1146at 1297.827 kb on - strand, within Psyr_1146at 1297.827 kb on - strand, within Psyr_1146at 1297.827 kb on - strand, within Psyr_1146at 1297.827 kb on - strand, within Psyr_1146at 1297.852 kb on - strand, within Psyr_1146at 1297.852 kb on - strand, within Psyr_1146at 1297.871 kb on + strand, within Psyr_1146at 1297.871 kb on + strand, within Psyr_1146at 1297.871 kb on + strand, within Psyr_1146at 1297.899 kb on + strand, within Psyr_1146at 1297.899 kb on + strand, within Psyr_1146at 1297.899 kb on + strand, within Psyr_1146at 1297.899 kb on + strand, within Psyr_1146at 1297.899 kb on + strand, within Psyr_1146at 1297.899 kb on + strand, within Psyr_1146at 1297.899 kb on + strand, within Psyr_1146at 1297.899 kb on + strand, within Psyr_1146at 1297.899 kb on + strand, within Psyr_1146at 1297.899 kb on + strand, within Psyr_1146at 1297.899 kb on + strand, within Psyr_1146at 1297.899 kb on + strand, within Psyr_1146at 1297.900 kb on - strand, within Psyr_1146at 1297.900 kb on - strand, within Psyr_1146at 1297.900 kb on - strand, within Psyr_1146at 1297.900 kb on - strand, within Psyr_1146at 1297.986 kb on + strand, within Psyr_1146at 1297.986 kb on + strand, within Psyr_1146at 1297.986 kb on + strand, within Psyr_1146at 1298.102 kb on + strand, within Psyr_1146at 1298.102 kb on + strand, within Psyr_1146at 1298.102 kb on + strand, within Psyr_1146at 1298.102 kb on + strand, within Psyr_1146at 1298.102 kb on + strand, within Psyr_1146at 1298.102 kb on + strand, within Psyr_1146at 1298.102 kb on + strand, within Psyr_1146at 1298.102 kb on + strand, within Psyr_1146at 1298.102 kb on + strand, within Psyr_1146at 1298.103 kb on - strand, within Psyr_1146at 1298.103 kb on - strand, within Psyr_1146at 1298.103 kb on - strand, within Psyr_1146at 1298.103 kb on - strand, within Psyr_1146at 1298.103 kb on - strand, within Psyr_1146at 1298.103 kb on - strand, within Psyr_1146at 1298.103 kb on - strand, within Psyr_1146at 1298.103 kb on - strand, within Psyr_1146at 1298.163 kb on - strand, within Psyr_1146at 1298.205 kb on - strand, within Psyr_1146at 1298.318 kb on + strandat 1298.319 kb on - strandat 1298.358 kb on + strandat 1298.455 kb on + strand, within Psyr_1147at 1298.455 kb on + strand, within Psyr_1147at 1298.455 kb on + strand, within Psyr_1147at 1298.485 kb on + strand, within Psyr_1147at 1298.485 kb on + strand, within Psyr_1147at 1298.485 kb on + strand, within Psyr_1147at 1298.485 kb on + strand, within Psyr_1147at 1298.485 kb on + strand, within Psyr_1147at 1298.486 kb on - strand, within Psyr_1147at 1298.486 kb on - strand, within Psyr_1147at 1298.486 kb on - strand, within Psyr_1147at 1298.486 kb on - strand, within Psyr_1147at 1298.542 kb on + strand, within Psyr_1147at 1298.542 kb on + strand, within Psyr_1147at 1298.542 kb on + strand, within Psyr_1147at 1298.542 kb on + strand, within Psyr_1147at 1298.542 kb on + strand, within Psyr_1147at 1298.543 kb on - strand, within Psyr_1147at 1298.543 kb on - strand, within Psyr_1147at 1298.543 kb on - strand, within Psyr_1147at 1298.573 kb on + strand, within Psyr_1147at 1298.574 kb on - strand, within Psyr_1147at 1298.604 kb on + strand, within Psyr_1147at 1298.604 kb on + strand, within Psyr_1147at 1298.612 kb on - strand, within Psyr_1147at 1298.646 kb on + strand, within Psyr_1147at 1298.646 kb on + strand, within Psyr_1147at 1298.678 kb on + strand, within Psyr_1147at 1298.678 kb on + strand, within Psyr_1147at 1298.678 kb on + strand, within Psyr_1147at 1298.678 kb on + strand, within Psyr_1147at 1298.678 kb on + strand, within Psyr_1147at 1298.679 kb on - strand, within Psyr_1147at 1298.679 kb on - strand, within Psyr_1147at 1298.950 kb on - strandat 1298.956 kb on + strandat 1298.956 kb on + strandat 1298.956 kb on + strandat 1298.956 kb on + strandat 1298.956 kb on + strandat 1298.956 kb on + strandat 1298.956 kb on + strandat 1298.957 kb on - strandat 1298.957 kb on - strandat 1298.957 kb on - strandat 1298.957 kb on - strandat 1298.957 kb on - strandat 1298.957 kb on - strandat 1298.957 kb on - strandat 1298.957 kb on - strandat 1298.957 kb on - strandat 1298.958 kb on + strandat 1299.064 kb on + strandat 1299.065 kb on - strandat 1299.065 kb on - strandat 1299.101 kb on - strandat 1299.134 kb on - strandat 1299.141 kb on + strandat 1299.141 kb on + strandat 1299.141 kb on + strandat 1299.194 kb on + strandat 1299.194 kb on + strandat 1299.195 kb on - strandat 1299.195 kb on - strandat 1299.215 kb on + strandat 1299.280 kb on + strand, within Psyr_1148at 1299.281 kb on - strand, within Psyr_1148

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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1,297,169 + -0.6
1,297,170 - -0.3
1,297,170 - +0.5
1,297,170 - -1.1
1,297,203 + -1.0
1,297,203 + -0.1
1,297,248 + +0.5
1,297,248 + -0.0
1,297,248 + -0.2
1,297,249 - +1.0
1,297,249 - -0.7
1,297,422 + +0.6
1,297,422 + +0.1
1,297,499 + -1.1
1,297,499 + -0.2
1,297,499 + -0.6
1,297,499 + -0.9
1,297,499 + +0.1
1,297,500 - -1.0
1,297,500 - -0.1
1,297,500 - +0.2
1,297,500 - -0.8
1,297,500 - -0.5
1,297,591 + Psyr_1146 0.18 -0.5
1,297,715 + Psyr_1146 0.32 -0.8
1,297,715 + Psyr_1146 0.32 -0.5
1,297,716 - Psyr_1146 0.32 -1.2
1,297,716 - Psyr_1146 0.32 +0.8
1,297,716 - Psyr_1146 0.32 +0.3
1,297,800 + Psyr_1146 0.41 +0.5
1,297,800 + Psyr_1146 0.41 +0.3
1,297,800 + Psyr_1146 0.41 -0.6
1,297,801 - Psyr_1146 0.41 +2.6
1,297,826 + Psyr_1146 0.44 -0.8
1,297,827 - Psyr_1146 0.44 -1.8
1,297,827 - Psyr_1146 0.44 +1.0
1,297,827 - Psyr_1146 0.44 -0.5
1,297,827 - Psyr_1146 0.44 +0.2
1,297,827 - Psyr_1146 0.44 -2.6
1,297,852 - Psyr_1146 0.47 -1.6
1,297,852 - Psyr_1146 0.47 +0.3
1,297,871 + Psyr_1146 0.49 +0.7
1,297,871 + Psyr_1146 0.49 -1.0
1,297,871 + Psyr_1146 0.49 +0.6
1,297,899 + Psyr_1146 0.52 -0.4
1,297,899 + Psyr_1146 0.52 -1.3
1,297,899 + Psyr_1146 0.52 -0.2
1,297,899 + Psyr_1146 0.52 -1.2
1,297,899 + Psyr_1146 0.52 -0.1
1,297,899 + Psyr_1146 0.52 -0.6
1,297,899 + Psyr_1146 0.52 -1.5
1,297,899 + Psyr_1146 0.52 -0.5
1,297,899 + Psyr_1146 0.52 -4.3
1,297,899 + Psyr_1146 0.52 +1.4
1,297,899 + Psyr_1146 0.52 -1.0
1,297,899 + Psyr_1146 0.52 -0.5
1,297,900 - Psyr_1146 0.52 +0.2
1,297,900 - Psyr_1146 0.52 +3.6
1,297,900 - Psyr_1146 0.52 +2.3
1,297,900 - Psyr_1146 0.52 -1.0
1,297,986 + Psyr_1146 0.62 -1.5
1,297,986 + Psyr_1146 0.62 -0.7
1,297,986 + Psyr_1146 0.62 -0.5
1,298,102 + Psyr_1146 0.75 +0.7
1,298,102 + Psyr_1146 0.75 -0.1
1,298,102 + Psyr_1146 0.75 -1.7
1,298,102 + Psyr_1146 0.75 +0.6
1,298,102 + Psyr_1146 0.75 +0.1
1,298,102 + Psyr_1146 0.75 +0.1
1,298,102 + Psyr_1146 0.75 -1.3
1,298,102 + Psyr_1146 0.75 -0.7
1,298,102 + Psyr_1146 0.75 -0.4
1,298,103 - Psyr_1146 0.75 -0.1
1,298,103 - Psyr_1146 0.75 -0.2
1,298,103 - Psyr_1146 0.75 -0.5
1,298,103 - Psyr_1146 0.75 -0.5
1,298,103 - Psyr_1146 0.75 +0.3
1,298,103 - Psyr_1146 0.75 +0.2
1,298,103 - Psyr_1146 0.75 +2.0
1,298,103 - Psyr_1146 0.75 -0.2
1,298,163 - Psyr_1146 0.82 -0.2
1,298,205 - Psyr_1146 0.87 +1.0
1,298,318 + +2.0
1,298,319 - +0.1
1,298,358 + -0.6
1,298,455 + Psyr_1147 0.15 -1.5
1,298,455 + Psyr_1147 0.15 -0.2
1,298,455 + Psyr_1147 0.15 -0.9
1,298,485 + Psyr_1147 0.20 +0.3
1,298,485 + Psyr_1147 0.20 +3.6
1,298,485 + Psyr_1147 0.20 -0.4
1,298,485 + Psyr_1147 0.20 +0.8
1,298,485 + Psyr_1147 0.20 -0.7
1,298,486 - Psyr_1147 0.20 -0.7
1,298,486 - Psyr_1147 0.20 -1.7
1,298,486 - Psyr_1147 0.20 -0.5
1,298,486 - Psyr_1147 0.20 +0.1
1,298,542 + Psyr_1147 0.29 +0.9
1,298,542 + Psyr_1147 0.29 +0.1
1,298,542 + Psyr_1147 0.29 +0.1
1,298,542 + Psyr_1147 0.29 -2.3
1,298,542 + Psyr_1147 0.29 -1.8
1,298,543 - Psyr_1147 0.29 +0.2
1,298,543 - Psyr_1147 0.29 -0.2
1,298,543 - Psyr_1147 0.29 -0.3
1,298,573 + Psyr_1147 0.33 +2.3
1,298,574 - Psyr_1147 0.33 +0.7
1,298,604 + Psyr_1147 0.38 +1.0
1,298,604 + Psyr_1147 0.38 +0.0
1,298,612 - Psyr_1147 0.39 -0.3
1,298,646 + Psyr_1147 0.45 +1.5
1,298,646 + Psyr_1147 0.45 -0.6
1,298,678 + Psyr_1147 0.50 -0.4
1,298,678 + Psyr_1147 0.50 +0.2
1,298,678 + Psyr_1147 0.50 -0.1
1,298,678 + Psyr_1147 0.50 +0.4
1,298,678 + Psyr_1147 0.50 +0.7
1,298,679 - Psyr_1147 0.50 -0.0
1,298,679 - Psyr_1147 0.50 +3.0
1,298,950 - -0.4
1,298,956 + +0.3
1,298,956 + -0.7
1,298,956 + +1.5
1,298,956 + +1.4
1,298,956 + +0.1
1,298,956 + -0.4
1,298,956 + +0.6
1,298,957 - -1.3
1,298,957 - +0.7
1,298,957 - -0.0
1,298,957 - -0.4
1,298,957 - +0.6
1,298,957 - +1.3
1,298,957 - +0.0
1,298,957 - +0.7
1,298,957 - +1.3
1,298,958 + -0.3
1,299,064 + +0.8
1,299,065 - -0.8
1,299,065 - -0.1
1,299,101 - -1.6
1,299,134 - -0.7
1,299,141 + -0.8
1,299,141 + -0.6
1,299,141 + -2.5
1,299,194 + +3.2
1,299,194 + -1.3
1,299,195 - -1.2
1,299,195 - -2.1
1,299,215 + -0.7
1,299,280 + Psyr_1148 0.13 +0.8
1,299,281 - Psyr_1148 0.13 +0.4

Or see this region's nucleotide sequence