Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0838

Experiment: KB with Avocatin B 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin B 10 mM
949,157	+		Psyr_0836	0.82	+1.0
949,157	+		Psyr_0836	0.82	+1.0
949,157	+		Psyr_0836	0.82	+0.1
949,157	+		Psyr_0836	0.82	+1.0
949,158	-		Psyr_0836	0.82	+0.4
949,158	-		Psyr_0836	0.82	-0.7
949,158	-		Psyr_0836	0.82	-0.4
949,158	-		Psyr_0836	0.82	-0.6
949,158	-		Psyr_0836	0.82	+0.2
949,158	-		Psyr_0836	0.82	+0.6
949,163	+		Psyr_0836	0.82	-1.6
949,163	+		Psyr_0836	0.82	-0.2
949,163	+		Psyr_0836	0.82	+0.8
949,164	-		Psyr_0836	0.82	+0.4
949,240	+		Psyr_0836	0.89	-0.6
949,296	-				+0.1
949,354	+				+2.2
949,355	-				+1.4
949,415	-				-0.8
949,605	+		Psyr_0837	0.33	+0.6
949,606	-		Psyr_0837	0.33	+1.0
949,626	+		Psyr_0837	0.36	+0.6
949,626	+		Psyr_0837	0.36	+0.8
949,762	+		Psyr_0837	0.55	-1.3
949,762	+		Psyr_0837	0.55	+0.1
949,763	-		Psyr_0837	0.55	-1.7
949,763	-		Psyr_0837	0.55	+0.7
949,903	+		Psyr_0837	0.75	+0.3
949,903	+		Psyr_0837	0.75	-0.2
949,903	+		Psyr_0837	0.75	-0.2
949,904	-		Psyr_0837	0.75	+2.1
949,904	-		Psyr_0837	0.75	+0.1
949,904	-		Psyr_0837	0.75	-1.0
949,904	-		Psyr_0837	0.75	-0.4
949,904	-		Psyr_0837	0.75	+1.1
949,904	-		Psyr_0837	0.75	+0.4
950,094	-				+1.4
950,333	+		Psyr_0838	0.55	-2.6
950,453	+		Psyr_0838	0.85	-0.7
950,453	+		Psyr_0838	0.85	+0.7
950,454	-		Psyr_0838	0.85	-1.3
950,536	+				+0.6
950,536	+				+0.1
950,596	+				-0.6
950,596	+				-0.8
950,597	-				-1.6
950,597	-				+0.3
950,597	-				+0.6
950,600	+				+0.4
950,601	-				-0.5
950,601	-				-0.2
950,632	+				-0.0
950,632	+				-0.4
950,632	+				-0.6
950,632	+				+0.7
950,632	+				-1.2
950,632	+				-1.1
950,632	+				-0.3
950,633	-				+1.4
950,633	-				+0.3
950,633	-				+1.2
950,633	-				+0.0
950,633	-				-0.2
950,633	-				+0.4
950,633	-				+0.8
950,633	-				-0.2
950,633	-				+0.6
950,633	-				-0.4
950,633	-				-1.3
950,633	-				+0.8
950,633	-				-0.7
950,633	-				-0.8
950,633	-				+0.9
950,633	-				-0.3
950,668	+				+0.8
950,668	+				-1.6
950,668	+				+1.4
950,668	+				-0.4
950,669	-				+0.3
950,669	-				+1.7
950,881	+		Psyr_0839	0.27	-0.5
950,882	-		Psyr_0839	0.27	+1.0
950,882	-		Psyr_0839	0.27	+3.3
950,882	-		Psyr_0839	0.27	-0.6
950,949	+		Psyr_0839	0.36	+0.3
950,949	+		Psyr_0839	0.36	+1.6
950,949	+		Psyr_0839	0.36	-0.1
950,949	+		Psyr_0839	0.36	-0.5
950,950	-		Psyr_0839	0.36	+2.5
950,950	-		Psyr_0839	0.36	+3.3
950,950	-		Psyr_0839	0.36	+3.4
950,950	-		Psyr_0839	0.36	-1.4
950,950	-		Psyr_0839	0.36	+0.9
950,950	-		Psyr_0839	0.36	-0.3
951,085	+		Psyr_0839	0.53	-0.6
951,085	+		Psyr_0839	0.53	+0.2
951,253	-		Psyr_0839	0.74	+1.1
951,253	-		Psyr_0839	0.74	+0.1
951,293	-		Psyr_0839	0.79	+4.5
951,314	+		Psyr_0839	0.82	-1.5
951,314	+		Psyr_0839	0.82	-0.2
951,314	+		Psyr_0839	0.82	-1.5
951,314	+		Psyr_0839	0.82	+1.4
951,315	-		Psyr_0839	0.82	+0.4
951,315	-		Psyr_0839	0.82	+0.8
951,315	-		Psyr_0839	0.82	-0.3
951,315	-		Psyr_0839	0.82	+0.5