Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0830

Experiment: KB with Avocatin B 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin B 10 mM
938,311	-		Psyr_0828	0.78	-0.5
938,417	+				-1.4
938,473	-				+0.2
938,479	+				+1.5
938,479	+				-2.1
938,480	-				-0.7
938,480	-				-0.7
938,492	+				-0.9
938,492	+				+1.5
938,492	+				+0.4
938,492	+				-1.6
938,492	+				+1.0
938,492	+				+0.4
938,492	+				+2.0
938,492	+				-3.0
938,492	+				-0.0
938,492	+				-0.4
938,492	+				+0.1
938,492	+				-0.6
938,492	+				-0.8
938,493	-				+0.1
938,493	-				-0.4
938,493	-				-1.2
938,493	-				+1.2
938,493	-				+0.1
938,493	-				+1.0
938,493	-				+0.2
938,493	-				+2.7
938,493	-				-0.6
938,493	-				+0.8
938,493	-				-0.8
938,493	-				+0.1
938,493	-				+0.3
938,633	+				-0.5
938,634	-				-0.3
938,634	-				+1.0
938,673	+				+0.8
938,673	+				+0.3
938,673	+				+2.4
938,674	-				-0.3
938,693	+				-0.6
939,192	-				-1.4
939,271	+				+1.4
939,468	-		Psyr_0830	0.17	-1.0
939,468	-		Psyr_0830	0.17	+3.0
939,468	-		Psyr_0830	0.17	-0.3
939,468	-		Psyr_0830	0.17	-0.8
939,644	+		Psyr_0830	0.29	-1.2
939,758	-		Psyr_0830	0.37	+0.6
940,025	-		Psyr_0830	0.55	-1.8
940,025	-		Psyr_0830	0.55	+1.0
940,025	-		Psyr_0830	0.55	-0.3
940,027	-		Psyr_0830	0.55	+1.4
940,123	-		Psyr_0830	0.61	-1.6
940,126	-		Psyr_0830	0.62	-1.0
940,126	-		Psyr_0830	0.62	-2.0
940,180	-		Psyr_0830	0.65	-1.0
940,181	+		Psyr_0830	0.65	-0.6
940,182	-		Psyr_0830	0.65	-0.3
940,182	-		Psyr_0830	0.65	+1.0
940,182	-		Psyr_0830	0.65	-3.5
940,182	-		Psyr_0830	0.65	-1.7
940,182	-		Psyr_0830	0.65	-3.4
940,182	-		Psyr_0830	0.65	-1.0
940,182	-		Psyr_0830	0.65	-0.4
940,565	-				+2.0
940,565	-				-0.3
940,565	-				-1.4
940,565	-				-0.6
940,688	+				-1.9
940,689	-				-0.4
940,689	-				+2.0
940,695	+				+0.7
940,696	-				+0.5
940,711	+				-0.0
940,711	+				+0.1
940,712	-				+0.3
940,712	-				+0.3
940,712	-				+0.4
940,763	+				-0.1
940,763	+				-1.2
940,764	-				+0.6
940,802	+				-1.0
940,805	+				-0.9
940,806	-				+0.1
940,957	+				-0.1
940,957	+				-1.3
940,957	+				-0.0
940,957	+				+0.5
940,957	+				+0.6
940,957	+				-0.2
940,957	+				+1.6
940,957	+				-1.0
940,958	-				-0.0
940,958	-				-1.1
940,958	-				+1.0
940,963	+				-0.5
940,963	+				+3.5
940,964	-				+1.4
941,006	+				-0.5
941,006	+				-0.4
941,006	+				+0.4
941,006	+				+0.4
941,006	+				-0.4
941,006	+				-0.6
941,006	+				+0.2
941,006	+				+0.8
941,007	-				-0.3
941,007	-				+1.0
941,033	-				+1.0
941,033	-				+0.4
941,049	+				-0.3
941,049	+				+0.4
941,088	+				-2.2
941,089	-				+2.0
941,103	-				+0.4
941,124	-				-0.0
941,124	-				-0.6
941,132	+				+0.5
941,132	+				+0.3
941,132	+				+0.5
941,132	+				+1.0
941,132	+				+0.2
941,133	-				+1.0
941,133	-				+0.4
941,133	-				+1.3
941,135	-				+0.2
941,135	-				+0.9
941,135	-				+0.2
941,135	-				+1.2
941,234	+				+0.6
941,234	+				+1.0
941,270	-				-0.6
941,321	+				+0.2
941,321	+				+0.3
941,322	-				+0.2
941,322	-				+3.0
941,322	-				-0.2
941,322	-				+0.1
941,544	-		Psyr_0831	0.15	-0.1
941,657	-		Psyr_0831	0.23	-0.2
941,657	-		Psyr_0831	0.23	+1.1
941,676	-		Psyr_0831	0.24	+1.3