Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0811

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0809 and Psyr_0810 are separated by 51 nucleotidesPsyr_0810 and Psyr_0811 are separated by 26 nucleotidesPsyr_0811 and Psyr_0812 are separated by 27 nucleotidesPsyr_0812 and Psyr_0813 are separated by 37 nucleotides Psyr_0809: Psyr_0809 - stress protein, at 914,252 to 915,421 _0809 Psyr_0810: Psyr_0810 - Tellurite resistance TerB, at 915,473 to 915,922 _0810 Psyr_0811: Psyr_0811 - Integral membrane protein TerC, at 915,949 to 916,983 _0811 Psyr_0812: Psyr_0812 - stress protein, at 917,011 to 917,586 _0812 Psyr_0813: Psyr_0813 - stress protein, at 917,624 to 918,202 _0813 Position (kb) 915 916 917Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 914.959 kb on + strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.960 kb on - strand, within Psyr_0809at 914.960 kb on - strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 915.124 kb on + strand, within Psyr_0809at 915.167 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.376 kb on + strandat 915.384 kb on - strandat 915.419 kb on + strandat 915.419 kb on + strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.420 kb on - strandat 915.434 kb on + strandat 915.435 kb on - strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.920 kb on + strandat 915.921 kb on - strandat 915.933 kb on + strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.946 kb on + strandat 915.947 kb on - strandat 915.947 kb on - strandat 915.947 kb on - strandat 915.965 kb on + strandat 915.966 kb on - strandat 916.129 kb on + strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.361 kb on + strand, within Psyr_0811at 916.362 kb on - strand, within Psyr_0811at 916.362 kb on - strand, within Psyr_0811at 916.362 kb on - strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.457 kb on - strand, within Psyr_0811at 916.747 kb on + strand, within Psyr_0811at 916.747 kb on + strand, within Psyr_0811at 916.747 kb on + strand, within Psyr_0811at 916.748 kb on - strand, within Psyr_0811at 916.748 kb on - strand, within Psyr_0811at 916.748 kb on - strand, within Psyr_0811at 916.846 kb on - strand, within Psyr_0811at 917.078 kb on + strand, within Psyr_0812at 917.078 kb on + strand, within Psyr_0812at 917.078 kb on + strand, within Psyr_0812at 917.079 kb on - strand, within Psyr_0812at 917.197 kb on + strand, within Psyr_0812at 917.197 kb on + strand, within Psyr_0812at 917.402 kb on + strand, within Psyr_0812at 917.492 kb on - strand, within Psyr_0812at 917.549 kb on + strandat 917.550 kb on - strandat 917.631 kb on + strandat 917.631 kb on + strandat 917.632 kb on - strandat 917.632 kb on - strandat 917.641 kb on + strandat 917.697 kb on + strand, within Psyr_0813at 917.698 kb on - strand, within Psyr_0813at 917.810 kb on + strand, within Psyr_0813at 917.810 kb on + strand, within Psyr_0813

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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914,959 + Psyr_0809 0.60 +0.3
914,959 + Psyr_0809 0.60 +0.8
914,959 + Psyr_0809 0.60 +0.9
914,959 + Psyr_0809 0.60 +0.2
914,960 - Psyr_0809 0.61 -1.5
914,960 - Psyr_0809 0.61 +0.1
914,979 + Psyr_0809 0.62 +3.5
914,979 + Psyr_0809 0.62 -3.5
914,979 + Psyr_0809 0.62 -1.1
914,979 + Psyr_0809 0.62 +0.1
914,979 + Psyr_0809 0.62 +0.1
914,979 + Psyr_0809 0.62 -0.7
914,979 + Psyr_0809 0.62 -1.1
914,979 + Psyr_0809 0.62 -0.3
914,980 - Psyr_0809 0.62 -0.8
914,980 - Psyr_0809 0.62 -0.4
914,980 - Psyr_0809 0.62 +0.7
914,980 - Psyr_0809 0.62 -0.6
914,980 - Psyr_0809 0.62 -0.1
914,980 - Psyr_0809 0.62 -0.2
914,980 - Psyr_0809 0.62 +0.5
914,980 - Psyr_0809 0.62 -0.5
915,124 + Psyr_0809 0.75 -1.1
915,167 + Psyr_0809 0.78 +0.4
915,179 + Psyr_0809 0.79 -0.6
915,179 + Psyr_0809 0.79 +0.8
915,179 + Psyr_0809 0.79 -0.4
915,179 + Psyr_0809 0.79 -0.6
915,179 + Psyr_0809 0.79 -0.6
915,179 + Psyr_0809 0.79 -1.0
915,179 + Psyr_0809 0.79 +0.0
915,180 - Psyr_0809 0.79 -0.1
915,180 - Psyr_0809 0.79 +0.1
915,180 - Psyr_0809 0.79 -1.2
915,180 - Psyr_0809 0.79 -1.8
915,180 - Psyr_0809 0.79 +0.9
915,180 - Psyr_0809 0.79 +0.1
915,180 - Psyr_0809 0.79 +0.3
915,180 - Psyr_0809 0.79 -0.2
915,180 - Psyr_0809 0.79 +0.0
915,180 - Psyr_0809 0.79 -0.7
915,180 - Psyr_0809 0.79 +0.1
915,180 - Psyr_0809 0.79 -0.4
915,376 + -0.1
915,384 - -0.3
915,419 + +2.1
915,419 + -0.4
915,420 - -0.1
915,420 - +0.4
915,420 - +0.2
915,420 - +0.3
915,420 - +0.4
915,420 - -0.6
915,420 - -0.1
915,434 + -0.6
915,435 - +3.3
915,468 + +0.3
915,468 + +0.5
915,468 + -0.7
915,468 + -0.9
915,468 + -0.9
915,468 + +0.4
915,469 - +0.3
915,469 - -0.4
915,469 - -1.1
915,469 - -0.2
915,920 + +1.8
915,921 - -1.1
915,933 + -0.1
915,946 + -2.4
915,946 + +1.4
915,946 + -0.5
915,947 - +1.5
915,947 - -1.4
915,947 - -1.0
915,965 + +0.4
915,966 - -0.7
916,129 + Psyr_0811 0.17 -0.6
916,130 - Psyr_0811 0.17 -2.0
916,130 - Psyr_0811 0.17 -1.4
916,130 - Psyr_0811 0.17 -1.5
916,130 - Psyr_0811 0.17 -1.1
916,361 + Psyr_0811 0.40 -1.9
916,362 - Psyr_0811 0.40 -0.0
916,362 - Psyr_0811 0.40 -1.1
916,362 - Psyr_0811 0.40 +2.5
916,364 + Psyr_0811 0.40 +0.1
916,364 + Psyr_0811 0.40 +0.1
916,364 + Psyr_0811 0.40 -0.8
916,365 - Psyr_0811 0.40 -0.6
916,365 - Psyr_0811 0.40 -1.2
916,365 - Psyr_0811 0.40 -1.3
916,365 - Psyr_0811 0.40 -0.6
916,457 - Psyr_0811 0.49 +0.2
916,747 + Psyr_0811 0.77 -0.7
916,747 + Psyr_0811 0.77 -1.9
916,747 + Psyr_0811 0.77 -0.2
916,748 - Psyr_0811 0.77 -0.1
916,748 - Psyr_0811 0.77 -1.1
916,748 - Psyr_0811 0.77 +0.7
916,846 - Psyr_0811 0.87 -1.3
917,078 + Psyr_0812 0.12 +1.0
917,078 + Psyr_0812 0.12 +0.2
917,078 + Psyr_0812 0.12 -1.0
917,079 - Psyr_0812 0.12 -0.2
917,197 + Psyr_0812 0.32 -0.2
917,197 + Psyr_0812 0.32 +0.8
917,402 + Psyr_0812 0.68 +0.7
917,492 - Psyr_0812 0.84 +1.3
917,549 + -0.8
917,550 - -1.5
917,631 + -0.7
917,631 + -0.2
917,632 - -0.3
917,632 - -0.3
917,641 + +1.2
917,697 + Psyr_0813 0.13 -0.8
917,698 - Psyr_0813 0.13 +0.8
917,810 + Psyr_0813 0.32 +0.1
917,810 + Psyr_0813 0.32 +0.4

Or see this region's nucleotide sequence