Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0735

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0734 and Psyr_0735 are separated by 363 nucleotidesPsyr_0735 and Psyr_0736 overlap by 14 nucleotidesPsyr_0736 and Psyr_0737 are separated by 213 nucleotides Psyr_0734: Psyr_0734 - Protein of unknown function DUF159, at 839,680 to 840,123 _0734 Psyr_0735: Psyr_0735 - Peptidase S24, S26A and S26B, at 840,487 to 840,921 _0735 Psyr_0736: Psyr_0736 - umuC protein, at 840,908 to 841,153 _0736 Psyr_0737: Psyr_0737 - putative transmembrane protein, at 841,367 to 841,780 _0737 Position (kb) 840 841Strain fitness (log2 ratio) -2 -1 0 1 2at 839.541 kb on + strandat 839.541 kb on + strandat 839.541 kb on + strandat 839.542 kb on - strandat 839.599 kb on + strandat 839.992 kb on - strand, within Psyr_0734at 839.997 kb on + strand, within Psyr_0734at 839.998 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.252 kb on + strandat 840.252 kb on + strandat 840.252 kb on + strandat 840.252 kb on + strandat 840.253 kb on - strandat 840.266 kb on + strandat 840.267 kb on - strandat 840.267 kb on - strandat 840.274 kb on + strandat 840.284 kb on - strandat 840.333 kb on - strandat 840.351 kb on - strandat 840.351 kb on - strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.454 kb on + strandat 840.829 kb on - strand, within Psyr_0735at 840.829 kb on - strand, within Psyr_0735at 840.829 kb on - strand, within Psyr_0735at 840.829 kb on - strand, within Psyr_0735at 840.892 kb on + strandat 840.938 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 841.143 kb on - strandat 841.143 kb on - strandat 841.152 kb on - strandat 841.152 kb on - strandat 841.152 kb on - strandat 841.154 kb on + strandat 841.154 kb on + strandat 841.154 kb on + strandat 841.154 kb on + strandat 841.154 kb on + strandat 841.155 kb on - strandat 841.159 kb on + strandat 841.160 kb on - strandat 841.160 kb on - strandat 841.223 kb on + strandat 841.223 kb on + strandat 841.224 kb on - strandat 841.340 kb on - strandat 841.354 kb on + strandat 841.357 kb on + strandat 841.446 kb on - strand, within Psyr_0737at 841.446 kb on - strand, within Psyr_0737at 841.487 kb on - strand, within Psyr_0737at 841.487 kb on - strand, within Psyr_0737at 841.497 kb on + strand, within Psyr_0737at 841.519 kb on + strand, within Psyr_0737at 841.520 kb on - strand, within Psyr_0737at 841.545 kb on - strand, within Psyr_0737at 841.545 kb on - strand, within Psyr_0737at 841.571 kb on - strand, within Psyr_0737at 841.571 kb on - strand, within Psyr_0737at 841.571 kb on - strand, within Psyr_0737at 841.571 kb on - strand, within Psyr_0737at 841.574 kb on + strand, within Psyr_0737at 841.574 kb on + strand, within Psyr_0737at 841.575 kb on - strand, within Psyr_0737at 841.575 kb on - strand, within Psyr_0737at 841.640 kb on - strand, within Psyr_0737at 841.641 kb on + strand, within Psyr_0737at 841.641 kb on + strand, within Psyr_0737at 841.641 kb on + strand, within Psyr_0737at 841.642 kb on - strand, within Psyr_0737at 841.716 kb on + strand, within Psyr_0737at 841.784 kb on - strandat 841.880 kb on + strandat 841.881 kb on - strandat 841.885 kb on - strandat 841.895 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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839,541 + -0.3
839,541 + +0.1
839,541 + -0.7
839,542 - +1.1
839,599 + +1.1
839,992 - Psyr_0734 0.70 +0.2
839,997 + Psyr_0734 0.71 +1.3
839,998 - Psyr_0734 0.72 -0.1
840,012 - Psyr_0734 0.75 -0.1
840,012 - Psyr_0734 0.75 +0.1
840,012 - Psyr_0734 0.75 +0.3
840,012 - Psyr_0734 0.75 +0.7
840,012 - Psyr_0734 0.75 +1.6
840,252 + -0.7
840,252 + +1.2
840,252 + -0.2
840,252 + +0.6
840,253 - -0.8
840,266 + +0.1
840,267 - +1.4
840,267 - +1.1
840,274 + -1.1
840,284 - -0.3
840,333 - +0.1
840,351 - +1.2
840,351 - -0.1
840,452 + -0.6
840,452 + +0.8
840,452 + -0.4
840,452 + -0.3
840,452 + -0.4
840,454 + +0.0
840,829 - Psyr_0735 0.79 -1.7
840,829 - Psyr_0735 0.79 -2.1
840,829 - Psyr_0735 0.79 -0.2
840,829 - Psyr_0735 0.79 -0.8
840,892 + -0.2
840,938 - Psyr_0736 0.12 +0.4
840,957 - Psyr_0736 0.20 -0.2
840,957 - Psyr_0736 0.20 +0.7
840,957 - Psyr_0736 0.20 -1.4
840,957 - Psyr_0736 0.20 +0.4
840,957 - Psyr_0736 0.20 +0.0
840,957 - Psyr_0736 0.20 +0.2
841,143 - -0.5
841,143 - +0.0
841,152 - +1.2
841,152 - -0.4
841,152 - -0.5
841,154 + +1.7
841,154 + -1.5
841,154 + +0.7
841,154 + -0.9
841,154 + +0.1
841,155 - +0.2
841,159 + -0.2
841,160 - -0.4
841,160 - +0.1
841,223 + -0.0
841,223 + +1.1
841,224 - +1.9
841,340 - -1.7
841,354 + +1.4
841,357 + +0.1
841,446 - Psyr_0737 0.19 -0.7
841,446 - Psyr_0737 0.19 -2.0
841,487 - Psyr_0737 0.29 -0.1
841,487 - Psyr_0737 0.29 +0.2
841,497 + Psyr_0737 0.31 -0.3
841,519 + Psyr_0737 0.37 -0.3
841,520 - Psyr_0737 0.37 +0.5
841,545 - Psyr_0737 0.43 -0.9
841,545 - Psyr_0737 0.43 -0.2
841,571 - Psyr_0737 0.49 -1.4
841,571 - Psyr_0737 0.49 +2.5
841,571 - Psyr_0737 0.49 -1.7
841,571 - Psyr_0737 0.49 +0.2
841,574 + Psyr_0737 0.50 -0.5
841,574 + Psyr_0737 0.50 +0.1
841,575 - Psyr_0737 0.50 -0.1
841,575 - Psyr_0737 0.50 +1.5
841,640 - Psyr_0737 0.66 -1.7
841,641 + Psyr_0737 0.66 +0.3
841,641 + Psyr_0737 0.66 +0.2
841,641 + Psyr_0737 0.66 -0.3
841,642 - Psyr_0737 0.66 +0.7
841,716 + Psyr_0737 0.84 -0.1
841,784 - -1.5
841,880 + +0.1
841,881 - -0.3
841,885 - +2.6
841,895 - -0.4

Or see this region's nucleotide sequence