Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0692

Experiment: KB with Avocatin B 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0691 and Psyr_0692 are separated by 67 nucleotidesPsyr_0692 and Psyr_0693 overlap by 4 nucleotidesPsyr_0693 and Psyr_0694 overlap by 7 nucleotides Psyr_0691: Psyr_0691 - gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03, at 795,237 to 796,964 _0691 Psyr_0692: Psyr_0692 - Binding-protein-dependent transport systems inner membrane component, at 797,032 to 797,799 _0692 Psyr_0693: Psyr_0693 - Binding-protein-dependent transport systems inner membrane component, at 797,796 to 798,623 _0693 Psyr_0694: Psyr_0694 - ABC transporter, at 798,617 to 799,414 _0694 Position (kb) 797 798Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 796.160 kb on + strand, within Psyr_0691at 796.160 kb on + strand, within Psyr_0691at 796.167 kb on + strand, within Psyr_0691at 796.168 kb on - strand, within Psyr_0691at 796.194 kb on + strand, within Psyr_0691at 796.194 kb on + strand, within Psyr_0691at 796.213 kb on - strand, within Psyr_0691at 796.213 kb on - strand, within Psyr_0691at 796.269 kb on + strand, within Psyr_0691at 796.269 kb on + strand, within Psyr_0691at 796.269 kb on + strand, within Psyr_0691at 796.269 kb on + strand, within Psyr_0691at 796.269 kb on + strand, within Psyr_0691at 796.270 kb on - strand, within Psyr_0691at 796.270 kb on - strand, within Psyr_0691at 796.270 kb on - strand, within Psyr_0691at 796.270 kb on - strand, within Psyr_0691at 796.270 kb on - strand, within Psyr_0691at 796.270 kb on - strand, within Psyr_0691at 796.361 kb on + strand, within Psyr_0691at 796.361 kb on + strand, within Psyr_0691at 796.362 kb on - strand, within Psyr_0691at 796.413 kb on + strand, within Psyr_0691at 796.413 kb on + strand, within Psyr_0691at 796.413 kb on + strand, within Psyr_0691at 796.413 kb on + strand, within Psyr_0691at 796.413 kb on + strand, within Psyr_0691at 796.413 kb on + strand, within Psyr_0691at 796.414 kb on - strand, within Psyr_0691at 796.521 kb on + strand, within Psyr_0691at 796.521 kb on + strand, within Psyr_0691at 796.521 kb on + strand, within Psyr_0691at 796.521 kb on + strand, within Psyr_0691at 796.522 kb on - strand, within Psyr_0691at 796.522 kb on - strand, within Psyr_0691at 796.522 kb on - strand, within Psyr_0691at 796.522 kb on - strand, within Psyr_0691at 796.693 kb on - strand, within Psyr_0691at 796.770 kb on - strand, within Psyr_0691at 796.915 kb on - strandat 796.915 kb on - strandat 797.037 kb on + strandat 797.038 kb on - strandat 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.153 kb on + strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.154 kb on - strand, within Psyr_0692at 797.235 kb on + strand, within Psyr_0692at 797.235 kb on + strand, within Psyr_0692at 797.235 kb on + strand, within Psyr_0692at 797.236 kb on - strand, within Psyr_0692at 797.236 kb on - strand, within Psyr_0692at 797.236 kb on - strand, within Psyr_0692at 797.238 kb on - strand, within Psyr_0692at 797.238 kb on - strand, within Psyr_0692at 797.238 kb on - strand, within Psyr_0692at 797.277 kb on - strand, within Psyr_0692at 797.277 kb on - strand, within Psyr_0692at 797.733 kb on - strandat 797.733 kb on - strandat 797.733 kb on - strandat 797.733 kb on - strandat 797.733 kb on - strandat 797.995 kb on + strand, within Psyr_0693at 797.995 kb on + strand, within Psyr_0693at 797.995 kb on + strand, within Psyr_0693at 797.995 kb on + strand, within Psyr_0693at 797.996 kb on - strand, within Psyr_0693at 797.996 kb on - strand, within Psyr_0693at 797.996 kb on - strand, within Psyr_0693at 798.118 kb on + strand, within Psyr_0693at 798.119 kb on - strand, within Psyr_0693at 798.119 kb on - strand, within Psyr_0693at 798.119 kb on - strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.142 kb on + strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.143 kb on - strand, within Psyr_0693at 798.375 kb on + strand, within Psyr_0693at 798.376 kb on - strand, within Psyr_0693at 798.510 kb on + strand, within Psyr_0693at 798.687 kb on + strandat 798.687 kb on + strandat 798.687 kb on + strandat 798.688 kb on - strandat 798.688 kb on - strandat 798.688 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
remove
796,160 + Psyr_0691 0.53 +0.8
796,160 + Psyr_0691 0.53 +0.8
796,167 + Psyr_0691 0.54 -0.5
796,168 - Psyr_0691 0.54 +0.1
796,194 + Psyr_0691 0.55 -1.4
796,194 + Psyr_0691 0.55 -1.3
796,213 - Psyr_0691 0.56 -0.0
796,213 - Psyr_0691 0.56 +0.7
796,269 + Psyr_0691 0.60 -1.1
796,269 + Psyr_0691 0.60 +0.6
796,269 + Psyr_0691 0.60 +0.4
796,269 + Psyr_0691 0.60 +0.1
796,269 + Psyr_0691 0.60 -1.0
796,270 - Psyr_0691 0.60 +0.8
796,270 - Psyr_0691 0.60 -0.4
796,270 - Psyr_0691 0.60 +0.2
796,270 - Psyr_0691 0.60 +0.2
796,270 - Psyr_0691 0.60 +0.4
796,270 - Psyr_0691 0.60 +2.5
796,361 + Psyr_0691 0.65 -0.1
796,361 + Psyr_0691 0.65 -0.5
796,362 - Psyr_0691 0.65 -0.6
796,413 + Psyr_0691 0.68 +0.3
796,413 + Psyr_0691 0.68 +0.4
796,413 + Psyr_0691 0.68 +0.7
796,413 + Psyr_0691 0.68 +0.5
796,413 + Psyr_0691 0.68 -0.4
796,413 + Psyr_0691 0.68 -0.4
796,414 - Psyr_0691 0.68 +0.7
796,521 + Psyr_0691 0.74 +1.5
796,521 + Psyr_0691 0.74 +1.1
796,521 + Psyr_0691 0.74 -3.1
796,521 + Psyr_0691 0.74 +0.6
796,522 - Psyr_0691 0.74 -0.1
796,522 - Psyr_0691 0.74 -0.2
796,522 - Psyr_0691 0.74 +0.7
796,522 - Psyr_0691 0.74 +1.4
796,693 - Psyr_0691 0.84 +0.9
796,770 - Psyr_0691 0.89 -0.6
796,915 - +0.1
796,915 - -0.5
797,037 + -0.1
797,038 - +0.4
797,153 + Psyr_0692 0.16 -1.2
797,153 + Psyr_0692 0.16 -2.6
797,153 + Psyr_0692 0.16 +0.6
797,153 + Psyr_0692 0.16 -1.3
797,153 + Psyr_0692 0.16 -2.1
797,153 + Psyr_0692 0.16 -0.3
797,153 + Psyr_0692 0.16 -1.0
797,153 + Psyr_0692 0.16 -0.6
797,153 + Psyr_0692 0.16 +1.1
797,153 + Psyr_0692 0.16 +0.2
797,153 + Psyr_0692 0.16 +0.5
797,153 + Psyr_0692 0.16 +0.4
797,154 - Psyr_0692 0.16 +2.1
797,154 - Psyr_0692 0.16 -0.2
797,154 - Psyr_0692 0.16 -0.7
797,154 - Psyr_0692 0.16 -2.1
797,154 - Psyr_0692 0.16 +1.9
797,154 - Psyr_0692 0.16 -0.9
797,154 - Psyr_0692 0.16 +0.5
797,154 - Psyr_0692 0.16 +0.8
797,154 - Psyr_0692 0.16 +0.4
797,154 - Psyr_0692 0.16 -1.0
797,154 - Psyr_0692 0.16 +0.4
797,235 + Psyr_0692 0.26 +0.4
797,235 + Psyr_0692 0.26 +0.6
797,235 + Psyr_0692 0.26 +0.9
797,236 - Psyr_0692 0.27 -1.3
797,236 - Psyr_0692 0.27 +1.1
797,236 - Psyr_0692 0.27 +0.7
797,238 - Psyr_0692 0.27 -0.9
797,238 - Psyr_0692 0.27 -0.1
797,238 - Psyr_0692 0.27 -0.1
797,277 - Psyr_0692 0.32 -2.2
797,277 - Psyr_0692 0.32 +0.4
797,733 - -0.1
797,733 - -0.1
797,733 - +0.2
797,733 - +0.8
797,733 - +0.6
797,995 + Psyr_0693 0.24 +0.8
797,995 + Psyr_0693 0.24 -0.5
797,995 + Psyr_0693 0.24 -0.1
797,995 + Psyr_0693 0.24 +0.1
797,996 - Psyr_0693 0.24 +0.3
797,996 - Psyr_0693 0.24 -1.1
797,996 - Psyr_0693 0.24 -1.0
798,118 + Psyr_0693 0.39 +1.2
798,119 - Psyr_0693 0.39 -1.8
798,119 - Psyr_0693 0.39 -0.4
798,119 - Psyr_0693 0.39 -1.0
798,142 + Psyr_0693 0.42 -0.7
798,142 + Psyr_0693 0.42 -0.4
798,142 + Psyr_0693 0.42 +0.7
798,142 + Psyr_0693 0.42 +1.7
798,142 + Psyr_0693 0.42 -0.6
798,142 + Psyr_0693 0.42 -0.3
798,142 + Psyr_0693 0.42 +0.1
798,142 + Psyr_0693 0.42 +0.4
798,142 + Psyr_0693 0.42 +0.6
798,143 - Psyr_0693 0.42 -0.4
798,143 - Psyr_0693 0.42 +0.3
798,143 - Psyr_0693 0.42 +2.5
798,143 - Psyr_0693 0.42 +0.7
798,143 - Psyr_0693 0.42 +1.5
798,143 - Psyr_0693 0.42 +2.1
798,143 - Psyr_0693 0.42 -1.6
798,375 + Psyr_0693 0.70 +0.0
798,376 - Psyr_0693 0.70 -0.3
798,510 + Psyr_0693 0.86 +0.6
798,687 + +0.5
798,687 + +3.5
798,687 + +1.4
798,688 - -0.9
798,688 - -0.7
798,688 - -0.8

Or see this region's nucleotide sequence