Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0571 and Psyr_0572 are separated by 93 nucleotides Psyr_0572 and Psyr_0573 are separated by 12 nucleotides Psyr_0573 and Psyr_0574 are separated by 96 nucleotides
Psyr_0571: Psyr_0571 - tRNA isopentenyltransferase, at 649,554 to 650,525
_0571
Psyr_0572: Psyr_0572 - RNA-binding protein Hfq, at 650,619 to 650,879
_0572
Psyr_0573: Psyr_0573 - GTP-binding protein HflX, at 650,892 to 652,193
_0573
Psyr_0574: Psyr_0574 - protease FtsH subunit HflK, at 652,290 to 653,492
_0574
Position (kb) 650
651
652
653 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 650.015 kb on + strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.062 kb on - strand, within Psyr_0571 at 650.154 kb on + strand, within Psyr_0571 at 650.155 kb on - strand, within Psyr_0571 at 650.218 kb on + strand, within Psyr_0571 at 650.428 kb on + strand at 650.432 kb on + strand at 650.432 kb on + strand at 650.536 kb on + strand at 650.536 kb on + strand at 650.544 kb on + strand at 650.585 kb on + strand at 650.588 kb on + strand at 650.593 kb on + strand at 650.881 kb on - strand at 651.060 kb on + strand, within Psyr_0573 at 651.060 kb on + strand, within Psyr_0573 at 651.060 kb on + strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.204 kb on - strand, within Psyr_0573 at 651.508 kb on - strand, within Psyr_0573 at 651.509 kb on + strand, within Psyr_0573 at 651.509 kb on + strand, within Psyr_0573 at 651.509 kb on + strand, within Psyr_0573 at 651.632 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.840 kb on + strand, within Psyr_0573 at 651.841 kb on - strand, within Psyr_0573 at 651.841 kb on - strand, within Psyr_0573 at 651.841 kb on - strand, within Psyr_0573 at 651.841 kb on - strand, within Psyr_0573 at 651.841 kb on - strand, within Psyr_0573 at 651.880 kb on + strand, within Psyr_0573 at 651.880 kb on + strand, within Psyr_0573 at 652.191 kb on + strand at 652.192 kb on - strand at 652.192 kb on - strand at 652.213 kb on + strand at 652.235 kb on + strand at 652.235 kb on + strand at 652.236 kb on - strand at 652.322 kb on + strand at 652.528 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.548 kb on + strand, within Psyr_0574 at 652.550 kb on + strand, within Psyr_0574 at 652.551 kb on - strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.560 kb on + strand, within Psyr_0574 at 652.561 kb on - strand, within Psyr_0574 at 652.561 kb on - strand, within Psyr_0574 at 652.561 kb on - strand, within Psyr_0574 at 652.641 kb on + strand, within Psyr_0574 at 652.641 kb on + strand, within Psyr_0574 at 652.665 kb on + strand, within Psyr_0574 at 652.665 kb on + strand, within Psyr_0574 at 652.666 kb on - strand, within Psyr_0574 at 652.666 kb on - strand, within Psyr_0574 at 652.695 kb on + strand, within Psyr_0574 at 652.762 kb on - strand, within Psyr_0574 at 653.064 kb on - strand, within Psyr_0574 at 653.123 kb on + strand, within Psyr_0574 at 653.192 kb on + strand, within Psyr_0574
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 650,015 + Psyr_0571 0.47 -2.9 650,016 - Psyr_0571 0.48 -1.8 650,016 - Psyr_0571 0.48 -0.0 650,016 - Psyr_0571 0.48 -0.9 650,016 - Psyr_0571 0.48 -2.9 650,062 - Psyr_0571 0.52 -2.6 650,154 + Psyr_0571 0.62 +0.2 650,155 - Psyr_0571 0.62 -0.3 650,218 + Psyr_0571 0.68 +1.0 650,428 + -1.3 650,432 + -1.3 650,432 + +2.0 650,536 + +1.6 650,536 + +1.1 650,544 + +1.3 650,585 + +0.2 650,588 + +0.6 650,593 + -1.1 650,881 - -0.0 651,060 + Psyr_0573 0.13 +2.1 651,060 + Psyr_0573 0.13 -1.9 651,060 + Psyr_0573 0.13 +0.5 651,061 - Psyr_0573 0.13 -1.6 651,061 - Psyr_0573 0.13 -1.3 651,061 - Psyr_0573 0.13 -1.3 651,061 - Psyr_0573 0.13 +0.2 651,061 - Psyr_0573 0.13 +1.8 651,204 - Psyr_0573 0.24 -1.5 651,508 - Psyr_0573 0.47 -1.6 651,509 + Psyr_0573 0.47 -2.2 651,509 + Psyr_0573 0.47 -0.7 651,509 + Psyr_0573 0.47 -1.4 651,632 + Psyr_0573 0.57 +0.5 651,840 + Psyr_0573 0.73 +0.7 651,840 + Psyr_0573 0.73 +0.2 651,840 + Psyr_0573 0.73 +0.1 651,840 + Psyr_0573 0.73 +0.8 651,840 + Psyr_0573 0.73 -1.7 651,840 + Psyr_0573 0.73 -1.0 651,841 - Psyr_0573 0.73 -1.4 651,841 - Psyr_0573 0.73 -1.6 651,841 - Psyr_0573 0.73 -1.5 651,841 - Psyr_0573 0.73 -1.8 651,841 - Psyr_0573 0.73 +3.3 651,880 + Psyr_0573 0.76 -1.0 651,880 + Psyr_0573 0.76 -0.9 652,191 + -1.0 652,192 - -2.3 652,192 - +1.0 652,213 + +1.4 652,235 + -0.7 652,235 + -0.1 652,236 - +1.0 652,322 + -2.2 652,528 + Psyr_0574 0.20 -3.0 652,548 + Psyr_0574 0.21 -0.4 652,548 + Psyr_0574 0.21 -2.2 652,548 + Psyr_0574 0.21 -3.3 652,548 + Psyr_0574 0.21 -2.6 652,550 + Psyr_0574 0.22 -1.3 652,551 - Psyr_0574 0.22 -2.0 652,560 + Psyr_0574 0.22 -3.0 652,560 + Psyr_0574 0.22 +0.2 652,560 + Psyr_0574 0.22 -1.0 652,560 + Psyr_0574 0.22 -2.0 652,560 + Psyr_0574 0.22 -3.5 652,560 + Psyr_0574 0.22 -0.6 652,560 + Psyr_0574 0.22 +1.0 652,560 + Psyr_0574 0.22 -3.1 652,560 + Psyr_0574 0.22 +0.5 652,561 - Psyr_0574 0.23 -2.7 652,561 - Psyr_0574 0.23 -3.2 652,561 - Psyr_0574 0.23 -1.8 652,641 + Psyr_0574 0.29 -0.8 652,641 + Psyr_0574 0.29 -0.0 652,665 + Psyr_0574 0.31 -1.3 652,665 + Psyr_0574 0.31 -3.6 652,666 - Psyr_0574 0.31 -1.3 652,666 - Psyr_0574 0.31 -0.8 652,695 + Psyr_0574 0.34 -1.0 652,762 - Psyr_0574 0.39 -0.2 653,064 - Psyr_0574 0.64 -0.3 653,123 + Psyr_0574 0.69 +0.2 653,192 + Psyr_0574 0.75 -1.8
Or see this region's nucleotide sequence