Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0523 and Psyr_0524 overlap by 1 nucleotides Psyr_0524 and Psyr_0525 overlap by 4 nucleotides Psyr_0525 and Psyr_0526 overlap by 1 nucleotides
Psyr_0523: Psyr_0523 - Lipopolysaccharide kinase, at 585,620 to 586,426
_0523
Psyr_0524: Psyr_0524 - Lipopolysaccharide kinase, at 586,426 to 587,160
_0524
Psyr_0525: Psyr_0525 - Lipopolysaccharide kinase, at 587,157 to 587,936
_0525
Psyr_0526: Psyr_0526 - conserved hypothetical protein, at 587,936 to 589,381
_0526
Position (kb) 587
588 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 586.570 kb on + strand, within Psyr_0524 at 586.570 kb on + strand, within Psyr_0524 at 586.570 kb on + strand, within Psyr_0524 at 586.573 kb on + strand, within Psyr_0524 at 586.573 kb on + strand, within Psyr_0524 at 586.617 kb on + strand, within Psyr_0524 at 586.893 kb on + strand, within Psyr_0524 at 587.121 kb on + strand at 587.121 kb on + strand at 587.130 kb on + strand at 587.130 kb on + strand at 587.168 kb on + strand at 587.191 kb on + strand at 587.343 kb on + strand, within Psyr_0525 at 587.343 kb on + strand, within Psyr_0525 at 587.343 kb on + strand, within Psyr_0525 at 587.454 kb on + strand, within Psyr_0525 at 587.454 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.657 kb on + strand, within Psyr_0525 at 587.657 kb on + strand, within Psyr_0525 at 587.657 kb on + strand, within Psyr_0525 at 587.657 kb on + strand, within Psyr_0525 at 587.921 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 586,570 + Psyr_0524 0.20 -2.1 586,570 + Psyr_0524 0.20 -1.6 586,570 + Psyr_0524 0.20 -0.6 586,573 + Psyr_0524 0.20 -0.1 586,573 + Psyr_0524 0.20 +1.0 586,617 + Psyr_0524 0.26 -1.7 586,893 + Psyr_0524 0.64 -0.0 587,121 + +1.6 587,121 + -1.5 587,130 + -3.2 587,130 + -0.6 587,168 + -0.4 587,191 + -0.8 587,343 + Psyr_0525 0.24 +1.3 587,343 + Psyr_0525 0.24 -1.9 587,343 + Psyr_0525 0.24 -0.6 587,454 + Psyr_0525 0.38 -1.3 587,454 + Psyr_0525 0.38 -1.8 587,632 + Psyr_0525 0.61 -1.6 587,632 + Psyr_0525 0.61 -0.4 587,632 + Psyr_0525 0.61 -1.0 587,632 + Psyr_0525 0.61 -0.5 587,632 + Psyr_0525 0.61 -1.8 587,632 + Psyr_0525 0.61 +1.7 587,632 + Psyr_0525 0.61 -0.9 587,657 + Psyr_0525 0.64 -1.5 587,657 + Psyr_0525 0.64 -3.1 587,657 + Psyr_0525 0.64 -0.6 587,657 + Psyr_0525 0.64 -0.0 587,921 + -0.9
Or see this region's nucleotide sequence