Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0425

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0423 and Psyr_0424 overlap by 4 nucleotidesPsyr_0424 and Psyr_0425 overlap by 4 nucleotidesPsyr_0425 and Psyr_0426 overlap by 4 nucleotidesPsyr_0426 and Psyr_0427 overlap by 4 nucleotides Psyr_0423: Psyr_0423 - 3-oxoacyl-(acyl-carrier-protein) reductase, putative, at 462,773 to 463,501 _0423 Psyr_0424: Psyr_0424 - conserved hypothetical protein, at 463,498 to 463,953 _0424 Psyr_0425: Psyr_0425 - Beta-ketoacyl synthase:Beta-ketoacyl synthase, at 463,950 to 465,146 _0425 Psyr_0426: Psyr_0426 - lipoprotein, putative, at 465,143 to 465,625 _0426 Psyr_0427: Psyr_0427 - conserved hypothetical protein, at 465,622 to 466,356 _0427 Position (kb) 463 464 465 466Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 463.022 kb on - strand, within Psyr_0423at 463.044 kb on + strand, within Psyr_0423at 463.044 kb on + strand, within Psyr_0423at 463.045 kb on - strand, within Psyr_0423at 463.112 kb on - strand, within Psyr_0423at 463.153 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.155 kb on + strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.156 kb on - strand, within Psyr_0423at 463.258 kb on - strand, within Psyr_0423at 463.260 kb on + strand, within Psyr_0423at 463.261 kb on - strand, within Psyr_0423at 463.523 kb on + strandat 463.547 kb on + strand, within Psyr_0424at 463.548 kb on - strand, within Psyr_0424at 463.548 kb on - strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.549 kb on + strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 463.550 kb on - strand, within Psyr_0424at 464.017 kb on + strandat 464.017 kb on + strandat 464.018 kb on - strandat 464.018 kb on - strandat 464.018 kb on - strandat 464.239 kb on - strand, within Psyr_0425at 464.239 kb on - strand, within Psyr_0425at 464.305 kb on + strand, within Psyr_0425at 464.495 kb on + strand, within Psyr_0425at 464.695 kb on + strand, within Psyr_0425at 464.695 kb on + strand, within Psyr_0425at 464.696 kb on - strand, within Psyr_0425at 465.136 kb on + strandat 465.137 kb on - strandat 465.137 kb on - strandat 465.173 kb on - strandat 465.180 kb on + strandat 465.180 kb on + strandat 465.180 kb on + strandat 465.181 kb on - strandat 465.181 kb on - strandat 465.181 kb on - strandat 465.181 kb on - strandat 465.181 kb on - strandat 465.228 kb on + strand, within Psyr_0426at 465.614 kb on + strandat 465.758 kb on + strand, within Psyr_0427at 465.758 kb on + strand, within Psyr_0427at 465.759 kb on - strand, within Psyr_0427at 465.759 kb on - strand, within Psyr_0427at 465.818 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.887 kb on + strand, within Psyr_0427at 465.888 kb on - strand, within Psyr_0427at 465.918 kb on - strand, within Psyr_0427at 465.918 kb on - strand, within Psyr_0427at 466.066 kb on + strand, within Psyr_0427

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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463,022 - Psyr_0423 0.34 +0.5
463,044 + Psyr_0423 0.37 +0.1
463,044 + Psyr_0423 0.37 +3.6
463,045 - Psyr_0423 0.37 +1.0
463,112 - Psyr_0423 0.47 -0.3
463,153 + Psyr_0423 0.52 +0.2
463,155 + Psyr_0423 0.52 +2.6
463,155 + Psyr_0423 0.52 +1.0
463,155 + Psyr_0423 0.52 +0.6
463,155 + Psyr_0423 0.52 -1.3
463,155 + Psyr_0423 0.52 +0.4
463,155 + Psyr_0423 0.52 +4.0
463,156 - Psyr_0423 0.53 +2.6
463,156 - Psyr_0423 0.53 -0.9
463,156 - Psyr_0423 0.53 -1.0
463,156 - Psyr_0423 0.53 -1.6
463,156 - Psyr_0423 0.53 +0.1
463,156 - Psyr_0423 0.53 -1.4
463,156 - Psyr_0423 0.53 -0.9
463,156 - Psyr_0423 0.53 +0.0
463,156 - Psyr_0423 0.53 +0.6
463,258 - Psyr_0423 0.67 +0.0
463,260 + Psyr_0423 0.67 +2.2
463,261 - Psyr_0423 0.67 -0.2
463,523 + +0.5
463,547 + Psyr_0424 0.11 -1.2
463,548 - Psyr_0424 0.11 +2.0
463,548 - Psyr_0424 0.11 -0.2
463,549 + Psyr_0424 0.11 +1.0
463,549 + Psyr_0424 0.11 +0.0
463,549 + Psyr_0424 0.11 -1.4
463,549 + Psyr_0424 0.11 +0.7
463,549 + Psyr_0424 0.11 -0.3
463,549 + Psyr_0424 0.11 -0.6
463,549 + Psyr_0424 0.11 -0.4
463,549 + Psyr_0424 0.11 -0.1
463,549 + Psyr_0424 0.11 -1.4
463,549 + Psyr_0424 0.11 -0.7
463,549 + Psyr_0424 0.11 +0.3
463,549 + Psyr_0424 0.11 +0.3
463,549 + Psyr_0424 0.11 +1.0
463,549 + Psyr_0424 0.11 -0.7
463,549 + Psyr_0424 0.11 -1.5
463,549 + Psyr_0424 0.11 -0.2
463,549 + Psyr_0424 0.11 +1.3
463,549 + Psyr_0424 0.11 -0.6
463,549 + Psyr_0424 0.11 -0.4
463,549 + Psyr_0424 0.11 -1.1
463,549 + Psyr_0424 0.11 +0.4
463,549 + Psyr_0424 0.11 -0.1
463,550 - Psyr_0424 0.11 -0.5
463,550 - Psyr_0424 0.11 +0.4
463,550 - Psyr_0424 0.11 -0.2
463,550 - Psyr_0424 0.11 -0.6
463,550 - Psyr_0424 0.11 +0.5
463,550 - Psyr_0424 0.11 +1.2
463,550 - Psyr_0424 0.11 +1.0
463,550 - Psyr_0424 0.11 +0.0
463,550 - Psyr_0424 0.11 +0.2
463,550 - Psyr_0424 0.11 -0.5
463,550 - Psyr_0424 0.11 +0.7
463,550 - Psyr_0424 0.11 +2.2
463,550 - Psyr_0424 0.11 -0.5
463,550 - Psyr_0424 0.11 -0.2
463,550 - Psyr_0424 0.11 -0.8
463,550 - Psyr_0424 0.11 +0.9
463,550 - Psyr_0424 0.11 -0.6
463,550 - Psyr_0424 0.11 +0.6
464,017 + +0.3
464,017 + -1.2
464,018 - +0.6
464,018 - -3.2
464,018 - +1.3
464,239 - Psyr_0425 0.24 +0.8
464,239 - Psyr_0425 0.24 -0.1
464,305 + Psyr_0425 0.30 -0.7
464,495 + Psyr_0425 0.46 +0.1
464,695 + Psyr_0425 0.62 +2.6
464,695 + Psyr_0425 0.62 +1.5
464,696 - Psyr_0425 0.62 +0.3
465,136 + +1.0
465,137 - -2.0
465,137 - +0.8
465,173 - +0.2
465,180 + -0.6
465,180 + -1.5
465,180 + +0.1
465,181 - +0.4
465,181 - +0.0
465,181 - -0.8
465,181 - +0.5
465,181 - +1.0
465,228 + Psyr_0426 0.18 +0.8
465,614 + -0.2
465,758 + Psyr_0427 0.19 -0.3
465,758 + Psyr_0427 0.19 +1.2
465,759 - Psyr_0427 0.19 -1.4
465,759 - Psyr_0427 0.19 -0.4
465,818 + Psyr_0427 0.27 -1.9
465,887 + Psyr_0427 0.36 +1.4
465,887 + Psyr_0427 0.36 +1.5
465,887 + Psyr_0427 0.36 +0.1
465,887 + Psyr_0427 0.36 -0.1
465,887 + Psyr_0427 0.36 +0.2
465,887 + Psyr_0427 0.36 +0.7
465,887 + Psyr_0427 0.36 +2.0
465,887 + Psyr_0427 0.36 +0.4
465,887 + Psyr_0427 0.36 +2.0
465,887 + Psyr_0427 0.36 +0.1
465,887 + Psyr_0427 0.36 +0.3
465,888 - Psyr_0427 0.36 -0.1
465,918 - Psyr_0427 0.40 +1.0
465,918 - Psyr_0427 0.40 +0.2
466,066 + Psyr_0427 0.60 -1.1

Or see this region's nucleotide sequence