Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0393

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0391 and Psyr_0392 are separated by 112 nucleotidesPsyr_0392 and Psyr_0393 overlap by 17 nucleotidesPsyr_0393 and Psyr_0394 are separated by 107 nucleotides Psyr_0391: Psyr_0391 - Poly granule associated, at 419,054 to 419,746 _0391 Psyr_0392: Psyr_0392 - hypothetical protein, at 419,859 to 420,164 _0392 Psyr_0393: Psyr_0393 - Protein of unknown function DUF971, at 420,148 to 420,519 _0393 Psyr_0394: Psyr_0394 - Heat shock protein HslU, at 420,627 to 421,964 _0394 Position (kb) 420 421Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 419.151 kb on - strand, within Psyr_0391at 419.151 kb on - strand, within Psyr_0391at 419.292 kb on + strand, within Psyr_0391at 419.404 kb on - strand, within Psyr_0391at 419.451 kb on + strand, within Psyr_0391at 419.451 kb on + strand, within Psyr_0391at 419.452 kb on - strand, within Psyr_0391at 419.452 kb on - strand, within Psyr_0391at 419.452 kb on - strand, within Psyr_0391at 419.452 kb on - strand, within Psyr_0391at 419.611 kb on + strand, within Psyr_0391at 419.696 kb on - strandat 419.747 kb on + strandat 419.747 kb on + strandat 419.748 kb on - strandat 419.769 kb on + strandat 419.769 kb on + strandat 419.770 kb on - strandat 419.770 kb on - strandat 419.796 kb on - strandat 419.868 kb on + strandat 419.868 kb on + strandat 419.869 kb on - strandat 419.869 kb on - strandat 419.869 kb on - strandat 419.945 kb on + strand, within Psyr_0392at 419.946 kb on - strand, within Psyr_0392at 419.988 kb on + strand, within Psyr_0392at 419.988 kb on + strand, within Psyr_0392at 419.988 kb on + strand, within Psyr_0392at 419.989 kb on - strand, within Psyr_0392at 419.989 kb on - strand, within Psyr_0392at 419.989 kb on - strand, within Psyr_0392at 420.018 kb on + strand, within Psyr_0392at 420.018 kb on + strand, within Psyr_0392at 420.018 kb on + strand, within Psyr_0392at 420.018 kb on + strand, within Psyr_0392at 420.018 kb on + strand, within Psyr_0392at 420.018 kb on + strand, within Psyr_0392at 420.019 kb on - strand, within Psyr_0392at 420.019 kb on - strand, within Psyr_0392at 420.019 kb on - strand, within Psyr_0392at 420.218 kb on + strand, within Psyr_0393at 420.219 kb on - strand, within Psyr_0393at 420.219 kb on - strand, within Psyr_0393at 420.219 kb on - strand, within Psyr_0393at 420.219 kb on - strand, within Psyr_0393at 420.264 kb on - strand, within Psyr_0393at 420.264 kb on - strand, within Psyr_0393at 420.264 kb on - strand, within Psyr_0393at 420.264 kb on - strand, within Psyr_0393at 420.320 kb on + strand, within Psyr_0393at 420.320 kb on + strand, within Psyr_0393at 420.321 kb on - strand, within Psyr_0393at 420.321 kb on - strand, within Psyr_0393at 420.321 kb on - strand, within Psyr_0393at 420.464 kb on + strand, within Psyr_0393at 420.493 kb on - strandat 420.493 kb on - strandat 420.540 kb on - strandat 420.540 kb on - strandat 420.612 kb on + strandat 420.613 kb on - strandat 420.613 kb on - strandat 420.615 kb on + strandat 420.615 kb on + strandat 420.615 kb on + strandat 420.615 kb on + strandat 420.615 kb on + strandat 420.616 kb on - strandat 420.616 kb on - strandat 420.616 kb on - strandat 420.616 kb on - strandat 420.616 kb on - strandat 420.616 kb on - strandat 420.635 kb on + strandat 420.635 kb on + strandat 420.635 kb on + strandat 420.635 kb on + strandat 420.636 kb on - strandat 420.636 kb on - strandat 420.636 kb on - strandat 420.636 kb on - strandat 420.637 kb on + strandat 420.637 kb on + strandat 420.680 kb on + strandat 420.688 kb on + strandat 420.688 kb on + strandat 420.688 kb on + strandat 420.689 kb on - strandat 420.689 kb on - strandat 420.908 kb on - strand, within Psyr_0394at 421.175 kb on + strand, within Psyr_0394at 421.175 kb on + strand, within Psyr_0394at 421.175 kb on + strand, within Psyr_0394at 421.176 kb on - strand, within Psyr_0394

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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419,151 - Psyr_0391 0.14 -0.6
419,151 - Psyr_0391 0.14 -0.2
419,292 + Psyr_0391 0.34 -1.0
419,404 - Psyr_0391 0.51 -0.1
419,451 + Psyr_0391 0.57 +1.2
419,451 + Psyr_0391 0.57 -0.3
419,452 - Psyr_0391 0.57 +0.6
419,452 - Psyr_0391 0.57 +0.0
419,452 - Psyr_0391 0.57 -0.1
419,452 - Psyr_0391 0.57 -0.6
419,611 + Psyr_0391 0.80 +1.8
419,696 - -1.3
419,747 + +1.7
419,747 + +0.2
419,748 - -0.3
419,769 + -0.1
419,769 + +1.0
419,770 - -0.8
419,770 - -0.0
419,796 - +0.7
419,868 + +0.3
419,868 + -0.4
419,869 - +0.6
419,869 - -0.1
419,869 - -1.2
419,945 + Psyr_0392 0.28 +0.2
419,946 - Psyr_0392 0.28 +0.7
419,988 + Psyr_0392 0.42 +0.8
419,988 + Psyr_0392 0.42 +0.0
419,988 + Psyr_0392 0.42 +0.0
419,989 - Psyr_0392 0.42 +0.2
419,989 - Psyr_0392 0.42 +0.8
419,989 - Psyr_0392 0.42 -0.4
420,018 + Psyr_0392 0.52 -0.3
420,018 + Psyr_0392 0.52 +0.8
420,018 + Psyr_0392 0.52 -0.4
420,018 + Psyr_0392 0.52 -1.4
420,018 + Psyr_0392 0.52 -1.0
420,018 + Psyr_0392 0.52 +0.4
420,019 - Psyr_0392 0.52 -2.1
420,019 - Psyr_0392 0.52 +1.0
420,019 - Psyr_0392 0.52 -0.6
420,218 + Psyr_0393 0.19 -2.9
420,219 - Psyr_0393 0.19 -0.6
420,219 - Psyr_0393 0.19 -1.5
420,219 - Psyr_0393 0.19 +0.1
420,219 - Psyr_0393 0.19 -2.1
420,264 - Psyr_0393 0.31 -1.6
420,264 - Psyr_0393 0.31 -1.0
420,264 - Psyr_0393 0.31 -0.1
420,264 - Psyr_0393 0.31 -0.2
420,320 + Psyr_0393 0.46 +0.1
420,320 + Psyr_0393 0.46 -0.2
420,321 - Psyr_0393 0.47 -0.4
420,321 - Psyr_0393 0.47 -1.9
420,321 - Psyr_0393 0.47 -1.8
420,464 + Psyr_0393 0.85 +0.0
420,493 - +2.0
420,493 - -0.2
420,540 - +1.8
420,540 - -0.1
420,612 + +1.0
420,613 - +0.8
420,613 - -0.7
420,615 + -0.2
420,615 + -1.6
420,615 + -0.7
420,615 + -0.5
420,615 + +0.2
420,616 - +0.4
420,616 - -1.3
420,616 - +2.0
420,616 - +1.3
420,616 - -2.6
420,616 - +2.6
420,635 + -0.1
420,635 + +0.0
420,635 + -1.0
420,635 + +0.3
420,636 - -0.0
420,636 - +0.0
420,636 - -0.4
420,636 - -0.2
420,637 + +0.7
420,637 + +0.6
420,680 + -0.2
420,688 + -0.9
420,688 + +1.2
420,688 + -0.8
420,689 - +1.6
420,689 - +0.4
420,908 - Psyr_0394 0.21 +0.3
421,175 + Psyr_0394 0.41 +0.3
421,175 + Psyr_0394 0.41 -1.0
421,175 + Psyr_0394 0.41 +0.6
421,176 - Psyr_0394 0.41 -0.0

Or see this region's nucleotide sequence