Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0252

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0250 and Psyr_0251 are separated by 89 nucleotidesPsyr_0251 and Psyr_0252 are separated by 313 nucleotidesPsyr_0252 and Psyr_0253 are separated by 37 nucleotides Psyr_0250: Psyr_0250 - conserved hypothetical protein, at 263,604 to 263,987 _0250 Psyr_0251: Psyr_0251 - transcriptional regulator, AsnC family, at 264,077 to 264,547 _0251 Psyr_0252: Psyr_0252 - adenylate cyclase, at 264,861 to 266,315 _0252 Psyr_0253: Psyr_0253 - acetylornithine deacetylase, at 266,353 to 267,540 _0253 Position (kb) 264 265 266 267Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 263.906 kb on + strand, within Psyr_0250at 263.906 kb on + strand, within Psyr_0250at 263.906 kb on + strand, within Psyr_0250at 263.906 kb on + strand, within Psyr_0250at 263.907 kb on - strand, within Psyr_0250at 263.957 kb on + strandat 264.032 kb on + strandat 264.033 kb on - strandat 264.034 kb on + strandat 264.059 kb on + strandat 264.098 kb on + strandat 264.098 kb on + strandat 264.098 kb on + strandat 264.282 kb on + strand, within Psyr_0251at 264.283 kb on - strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on + strand, within Psyr_0251at 264.374 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.375 kb on - strand, within Psyr_0251at 264.434 kb on + strand, within Psyr_0251at 264.651 kb on - strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.671 kb on + strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.672 kb on - strandat 264.735 kb on + strandat 264.735 kb on + strandat 264.735 kb on + strandat 264.736 kb on - strandat 264.736 kb on - strandat 264.785 kb on - strandat 264.785 kb on - strandat 264.841 kb on + strandat 264.842 kb on - strandat 264.842 kb on - strandat 264.862 kb on + strandat 264.862 kb on + strandat 264.862 kb on + strandat 264.862 kb on + strandat 264.863 kb on - strandat 264.863 kb on - strandat 264.863 kb on - strandat 264.863 kb on - strandat 264.863 kb on - strandat 264.863 kb on - strandat 265.235 kb on + strand, within Psyr_0252at 265.235 kb on + strand, within Psyr_0252at 265.236 kb on - strand, within Psyr_0252at 265.236 kb on - strand, within Psyr_0252at 265.236 kb on - strand, within Psyr_0252at 265.236 kb on - strand, within Psyr_0252at 265.236 kb on - strand, within Psyr_0252at 265.305 kb on + strand, within Psyr_0252at 265.305 kb on + strand, within Psyr_0252at 265.305 kb on + strand, within Psyr_0252at 265.306 kb on - strand, within Psyr_0252at 265.373 kb on + strand, within Psyr_0252at 265.547 kb on - strand, within Psyr_0252at 265.547 kb on - strand, within Psyr_0252at 265.547 kb on - strand, within Psyr_0252at 265.972 kb on + strand, within Psyr_0252at 265.973 kb on - strand, within Psyr_0252at 265.973 kb on - strand, within Psyr_0252at 266.105 kb on - strand, within Psyr_0252at 266.105 kb on - strand, within Psyr_0252at 266.253 kb on - strandat 266.344 kb on + strandat 266.352 kb on + strandat 266.353 kb on - strandat 266.378 kb on + strandat 266.379 kb on - strandat 266.581 kb on + strand, within Psyr_0253at 266.581 kb on + strand, within Psyr_0253at 266.581 kb on + strand, within Psyr_0253at 266.582 kb on - strand, within Psyr_0253at 266.582 kb on - strand, within Psyr_0253at 266.582 kb on - strand, within Psyr_0253at 266.916 kb on + strand, within Psyr_0253at 267.108 kb on + strand, within Psyr_0253at 267.108 kb on + strand, within Psyr_0253at 267.109 kb on - strand, within Psyr_0253at 267.109 kb on - strand, within Psyr_0253at 267.109 kb on - strand, within Psyr_0253at 267.263 kb on - strand, within Psyr_0253

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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263,906 + Psyr_0250 0.79 +0.3
263,906 + Psyr_0250 0.79 -0.8
263,906 + Psyr_0250 0.79 -0.9
263,906 + Psyr_0250 0.79 -1.9
263,907 - Psyr_0250 0.79 -0.7
263,957 + -1.3
264,032 + +0.6
264,033 - +0.2
264,034 + +1.4
264,059 + +0.0
264,098 + -1.3
264,098 + +1.0
264,098 + -0.6
264,282 + Psyr_0251 0.44 -0.1
264,283 - Psyr_0251 0.44 +2.3
264,374 + Psyr_0251 0.63 +1.0
264,374 + Psyr_0251 0.63 +1.2
264,374 + Psyr_0251 0.63 -0.8
264,374 + Psyr_0251 0.63 -1.0
264,374 + Psyr_0251 0.63 +0.5
264,374 + Psyr_0251 0.63 +0.5
264,374 + Psyr_0251 0.63 +0.3
264,374 + Psyr_0251 0.63 +2.0
264,374 + Psyr_0251 0.63 -0.6
264,374 - Psyr_0251 0.63 +0.8
264,375 - Psyr_0251 0.63 -0.8
264,375 - Psyr_0251 0.63 +0.2
264,375 - Psyr_0251 0.63 -1.2
264,375 - Psyr_0251 0.63 -0.2
264,375 - Psyr_0251 0.63 -0.1
264,375 - Psyr_0251 0.63 -0.5
264,375 - Psyr_0251 0.63 -0.4
264,375 - Psyr_0251 0.63 -0.3
264,375 - Psyr_0251 0.63 +0.5
264,375 - Psyr_0251 0.63 +0.3
264,375 - Psyr_0251 0.63 -0.4
264,375 - Psyr_0251 0.63 +1.0
264,434 + Psyr_0251 0.76 -0.5
264,651 - -0.2
264,671 + +0.9
264,671 + -0.3
264,671 + +1.1
264,671 + -0.7
264,671 + +0.4
264,671 + +0.2
264,672 - +0.6
264,672 - -0.8
264,672 - +0.2
264,672 - +0.0
264,672 - -2.5
264,672 - -0.1
264,735 + +0.3
264,735 + +2.9
264,735 + +0.5
264,736 - -0.1
264,736 - +0.9
264,785 - -0.4
264,785 - +0.6
264,841 + -1.1
264,842 - +1.2
264,842 - -0.0
264,862 + -0.0
264,862 + -0.5
264,862 + +0.4
264,862 + +1.2
264,863 - -2.0
264,863 - +0.0
264,863 - -0.3
264,863 - -0.1
264,863 - +0.7
264,863 - -0.8
265,235 + Psyr_0252 0.26 +1.0
265,235 + Psyr_0252 0.26 +4.7
265,236 - Psyr_0252 0.26 -0.1
265,236 - Psyr_0252 0.26 -1.2
265,236 - Psyr_0252 0.26 +0.0
265,236 - Psyr_0252 0.26 +3.0
265,236 - Psyr_0252 0.26 +0.9
265,305 + Psyr_0252 0.31 +0.0
265,305 + Psyr_0252 0.31 +0.6
265,305 + Psyr_0252 0.31 +2.0
265,306 - Psyr_0252 0.31 +0.1
265,373 + Psyr_0252 0.35 -0.2
265,547 - Psyr_0252 0.47 +0.3
265,547 - Psyr_0252 0.47 +1.0
265,547 - Psyr_0252 0.47 +2.0
265,972 + Psyr_0252 0.76 +0.8
265,973 - Psyr_0252 0.76 -0.5
265,973 - Psyr_0252 0.76 +1.0
266,105 - Psyr_0252 0.85 +0.0
266,105 - Psyr_0252 0.85 +1.4
266,253 - +0.2
266,344 + +2.6
266,352 + +0.4
266,353 - -0.3
266,378 + +1.1
266,379 - +1.3
266,581 + Psyr_0253 0.19 +0.3
266,581 + Psyr_0253 0.19 +1.3
266,581 + Psyr_0253 0.19 +0.7
266,582 - Psyr_0253 0.19 +0.2
266,582 - Psyr_0253 0.19 +0.5
266,582 - Psyr_0253 0.19 -0.0
266,916 + Psyr_0253 0.47 +0.6
267,108 + Psyr_0253 0.64 -0.5
267,108 + Psyr_0253 0.64 -0.4
267,109 - Psyr_0253 0.64 -0.1
267,109 - Psyr_0253 0.64 -2.3
267,109 - Psyr_0253 0.64 -0.9
267,263 - Psyr_0253 0.77 -0.2

Or see this region's nucleotide sequence