Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0195

Experiment: KB with Avocatin B 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0193 and Psyr_0194 are separated by 235 nucleotidesPsyr_0194 and Psyr_0195 are separated by 15 nucleotidesPsyr_0195 and Psyr_0196 are separated by 3 nucleotides Psyr_0193: Psyr_0193 - transcriptional regulator, AraC family, at 203,917 to 204,834 _0193 Psyr_0194: Psyr_0194 - Short-chain dehydrogenase/reductase SDR, at 205,070 to 205,804 _0194 Psyr_0195: Psyr_0195 - conserved hypothetical protein, at 205,820 to 206,563 _0195 Psyr_0196: Psyr_0196 - conserved hypothetical protein, at 206,567 to 209,947 _0196 Position (kb) 205 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 204.828 kb on + strandat 204.839 kb on - strandat 204.865 kb on + strandat 204.865 kb on + strandat 204.923 kb on - strandat 204.995 kb on + strandat 204.996 kb on - strandat 205.095 kb on + strandat 205.095 kb on + strandat 205.095 kb on + strandat 205.096 kb on - strandat 205.096 kb on - strandat 205.096 kb on - strandat 205.096 kb on - strandat 205.423 kb on - strand, within Psyr_0194at 205.453 kb on + strand, within Psyr_0194at 205.453 kb on + strand, within Psyr_0194at 205.454 kb on - strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.733 kb on + strandat 205.733 kb on + strandat 205.733 kb on + strandat 205.734 kb on - strandat 205.734 kb on - strandat 205.734 kb on - strandat 205.787 kb on - strandat 205.800 kb on - strandat 205.800 kb on - strandat 205.887 kb on + strandat 205.887 kb on + strandat 205.888 kb on - strandat 205.996 kb on - strand, within Psyr_0195at 205.996 kb on - strand, within Psyr_0195at 206.048 kb on + strand, within Psyr_0195at 206.065 kb on + strand, within Psyr_0195at 206.065 kb on + strand, within Psyr_0195at 206.120 kb on + strand, within Psyr_0195at 206.199 kb on + strand, within Psyr_0195at 206.232 kb on + strand, within Psyr_0195at 206.232 kb on + strand, within Psyr_0195at 206.232 kb on + strand, within Psyr_0195at 206.233 kb on - strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.239 kb on - strand, within Psyr_0195at 206.239 kb on - strand, within Psyr_0195at 206.270 kb on - strand, within Psyr_0195at 206.274 kb on + strand, within Psyr_0195at 206.274 kb on + strand, within Psyr_0195at 206.275 kb on - strand, within Psyr_0195at 206.305 kb on + strand, within Psyr_0195at 206.305 kb on + strand, within Psyr_0195at 206.379 kb on + strand, within Psyr_0195at 206.380 kb on - strand, within Psyr_0195at 206.390 kb on - strand, within Psyr_0195at 206.533 kb on + strandat 206.563 kb on + strandat 206.564 kb on - strandat 206.653 kb on + strandat 206.654 kb on - strandat 206.669 kb on + strandat 206.674 kb on + strandat 206.683 kb on - strandat 206.713 kb on + strandat 206.714 kb on - strandat 206.735 kb on + strandat 206.735 kb on + strandat 206.736 kb on - strandat 206.736 kb on - strandat 206.736 kb on - strandat 206.736 kb on - strandat 206.747 kb on + strandat 206.747 kb on + strandat 206.747 kb on + strandat 206.747 kb on + strandat 206.748 kb on - strandat 206.748 kb on - strandat 206.748 kb on - strandat 206.748 kb on - strandat 206.752 kb on - strandat 206.752 kb on - strandat 206.752 kb on - strandat 206.752 kb on - strandat 206.907 kb on - strand, within Psyr_0196at 206.921 kb on + strand, within Psyr_0196at 206.933 kb on + strand, within Psyr_0196at 206.934 kb on - strand, within Psyr_0196at 206.951 kb on + strand, within Psyr_0196at 206.951 kb on + strand, within Psyr_0196at 206.951 kb on + strand, within Psyr_0196at 206.991 kb on - strand, within Psyr_0196at 207.061 kb on - strand, within Psyr_0196at 207.064 kb on - strand, within Psyr_0196at 207.111 kb on - strand, within Psyr_0196at 207.111 kb on - strand, within Psyr_0196at 207.139 kb on + strand, within Psyr_0196at 207.139 kb on + strand, within Psyr_0196at 207.140 kb on - strandat 207.236 kb on + strand, within Psyr_0196at 207.237 kb on - strand, within Psyr_0196at 207.237 kb on - strand, within Psyr_0196at 207.237 kb on - strand, within Psyr_0196at 207.278 kb on + strand, within Psyr_0196at 207.278 kb on + strand, within Psyr_0196at 207.278 kb on + strand, within Psyr_0196at 207.282 kb on + strand, within Psyr_0196at 207.282 kb on + strand, within Psyr_0196at 207.283 kb on - strand, within Psyr_0196at 207.293 kb on + strand, within Psyr_0196at 207.293 kb on + strand, within Psyr_0196at 207.294 kb on - strand, within Psyr_0196at 207.294 kb on - strand, within Psyr_0196at 207.308 kb on + strand, within Psyr_0196at 207.308 kb on + strand, within Psyr_0196at 207.311 kb on - strand, within Psyr_0196at 207.371 kb on - strand, within Psyr_0196at 207.371 kb on - strand, within Psyr_0196at 207.431 kb on + strand, within Psyr_0196at 207.448 kb on + strand, within Psyr_0196at 207.448 kb on + strand, within Psyr_0196at 207.449 kb on - strand, within Psyr_0196at 207.449 kb on - strand, within Psyr_0196at 207.482 kb on + strand, within Psyr_0196at 207.548 kb on + strand, within Psyr_0196at 207.548 kb on + strand, within Psyr_0196at 207.549 kb on - strand, within Psyr_0196at 207.549 kb on - strand, within Psyr_0196

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
remove
204,828 + +1.3
204,839 - +1.1
204,865 + +0.2
204,865 + +0.3
204,923 - +0.7
204,995 + -0.2
204,996 - +2.6
205,095 + +0.7
205,095 + +3.1
205,095 + +0.4
205,096 - -0.1
205,096 - +0.7
205,096 - -0.1
205,096 - -1.4
205,423 - Psyr_0194 0.48 -0.4
205,453 + Psyr_0194 0.52 +1.1
205,453 + Psyr_0194 0.52 +4.6
205,454 - Psyr_0194 0.52 +2.1
205,532 + Psyr_0194 0.63 +2.1
205,532 + Psyr_0194 0.63 -0.8
205,532 + Psyr_0194 0.63 +0.1
205,532 + Psyr_0194 0.63 -0.3
205,532 + Psyr_0194 0.63 +2.1
205,532 + Psyr_0194 0.63 +0.0
205,533 - Psyr_0194 0.63 +1.1
205,533 - Psyr_0194 0.63 -2.1
205,533 - Psyr_0194 0.63 +0.5
205,733 + -0.0
205,733 + -0.4
205,733 + -0.8
205,734 - +0.8
205,734 - -0.3
205,734 - -0.8
205,787 - +0.2
205,800 - -1.6
205,800 - -1.0
205,887 + -0.6
205,887 + -1.0
205,888 - +1.1
205,996 - Psyr_0195 0.24 -1.5
205,996 - Psyr_0195 0.24 -1.4
206,048 + Psyr_0195 0.31 -1.0
206,065 + Psyr_0195 0.33 +0.5
206,065 + Psyr_0195 0.33 +0.1
206,120 + Psyr_0195 0.40 +0.5
206,199 + Psyr_0195 0.51 +0.2
206,232 + Psyr_0195 0.55 -1.1
206,232 + Psyr_0195 0.55 -1.9
206,232 + Psyr_0195 0.55 -1.4
206,233 - Psyr_0195 0.56 -1.3
206,238 + Psyr_0195 0.56 +0.4
206,238 + Psyr_0195 0.56 -0.5
206,238 + Psyr_0195 0.56 -1.6
206,238 + Psyr_0195 0.56 +0.4
206,238 + Psyr_0195 0.56 +0.3
206,238 + Psyr_0195 0.56 -0.1
206,239 - Psyr_0195 0.56 -0.2
206,239 - Psyr_0195 0.56 -2.0
206,270 - Psyr_0195 0.60 -2.3
206,274 + Psyr_0195 0.61 -1.5
206,274 + Psyr_0195 0.61 +0.2
206,275 - Psyr_0195 0.61 -0.5
206,305 + Psyr_0195 0.65 +3.4
206,305 + Psyr_0195 0.65 -1.3
206,379 + Psyr_0195 0.75 -0.5
206,380 - Psyr_0195 0.75 -1.3
206,390 - Psyr_0195 0.77 -0.9
206,533 + +1.1
206,563 + +0.2
206,564 - +0.0
206,653 + -0.5
206,654 - -0.9
206,669 + +1.8
206,674 + -0.5
206,683 - -0.5
206,713 + +0.6
206,714 - +0.4
206,735 + +0.6
206,735 + -0.8
206,736 - +1.2
206,736 - -0.4
206,736 - +0.1
206,736 - +0.3
206,747 + -0.3
206,747 + +1.5
206,747 + -0.8
206,747 + -0.8
206,748 - +0.7
206,748 - -0.7
206,748 - -0.5
206,748 - +0.4
206,752 - -0.1
206,752 - -3.2
206,752 - +0.3
206,752 - +0.7
206,907 - Psyr_0196 0.10 -0.8
206,921 + Psyr_0196 0.10 -0.2
206,933 + Psyr_0196 0.11 -0.6
206,934 - Psyr_0196 0.11 +0.9
206,951 + Psyr_0196 0.11 +1.1
206,951 + Psyr_0196 0.11 -0.1
206,951 + Psyr_0196 0.11 -0.7
206,991 - Psyr_0196 0.13 -0.5
207,061 - Psyr_0196 0.15 -1.5
207,064 - Psyr_0196 0.15 -0.2
207,111 - Psyr_0196 0.16 +0.4
207,111 - Psyr_0196 0.16 -0.5
207,139 + Psyr_0196 0.17 -0.3
207,139 + Psyr_0196 0.17 +0.5
207,140 - +0.2
207,236 + Psyr_0196 0.20 -1.1
207,237 - Psyr_0196 0.20 +1.4
207,237 - Psyr_0196 0.20 +1.6
207,237 - Psyr_0196 0.20 +0.2
207,278 + Psyr_0196 0.21 -1.3
207,278 + Psyr_0196 0.21 +1.5
207,278 + Psyr_0196 0.21 +0.7
207,282 + Psyr_0196 0.21 +1.1
207,282 + Psyr_0196 0.21 -1.4
207,283 - Psyr_0196 0.21 +0.8
207,293 + Psyr_0196 0.21 -0.5
207,293 + Psyr_0196 0.21 +1.3
207,294 - Psyr_0196 0.22 +0.1
207,294 - Psyr_0196 0.22 -0.0
207,308 + Psyr_0196 0.22 -0.9
207,308 + Psyr_0196 0.22 -1.3
207,311 - Psyr_0196 0.22 +1.0
207,371 - Psyr_0196 0.24 -0.2
207,371 - Psyr_0196 0.24 +1.9
207,431 + Psyr_0196 0.26 -0.2
207,448 + Psyr_0196 0.26 -0.9
207,448 + Psyr_0196 0.26 +0.2
207,449 - Psyr_0196 0.26 +0.1
207,449 - Psyr_0196 0.26 -0.1
207,482 + Psyr_0196 0.27 +0.5
207,548 + Psyr_0196 0.29 +1.0
207,548 + Psyr_0196 0.29 -0.3
207,549 - Psyr_0196 0.29 +0.3
207,549 - Psyr_0196 0.29 +0.6

Or see this region's nucleotide sequence