Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0173 and Psyr_0174 are separated by 456 nucleotides Psyr_0174 and Psyr_0175 are separated by 90 nucleotides Psyr_0175 and Psyr_0176 are separated by 216 nucleotides
Psyr_0173: Psyr_0173 - SSU ribosomal protein S6P modification protein, at 186,867 to 187,772
_0173
Psyr_0174: Psyr_0174 - Sodium:dicarboxylate symporter, at 188,229 to 189,560
_0174
Psyr_0175: Psyr_0175 - conserved hypothetical protein, at 189,651 to 189,926
_0175
Psyr_0176: Psyr_0176 - conserved hypothetical protein, at 190,143 to 190,391
_0176
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.401 kb on + strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.402 kb on - strand, within Psyr_0173 at 187.843 kb on - strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.847 kb on + strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.848 kb on - strand at 187.856 kb on + strand at 187.935 kb on + strand at 187.935 kb on + strand at 187.935 kb on + strand at 187.935 kb on + strand at 187.936 kb on - strand at 187.936 kb on - strand at 187.936 kb on - strand at 187.978 kb on + strand at 187.979 kb on - strand at 188.047 kb on + strand at 188.047 kb on + strand at 188.047 kb on + strand at 188.047 kb on + strand at 188.047 kb on + strand at 188.047 kb on + strand at 188.048 kb on - strand at 188.048 kb on - strand at 188.048 kb on - strand at 188.048 kb on - strand at 188.048 kb on - strand at 188.050 kb on - strand at 188.066 kb on + strand at 188.066 kb on + strand at 188.067 kb on - strand at 188.067 kb on - strand at 188.089 kb on + strand at 188.222 kb on + strand at 188.223 kb on - strand at 188.223 kb on - strand at 188.225 kb on + strand at 188.225 kb on + strand at 188.225 kb on + strand at 188.226 kb on - strand at 188.226 kb on - strand at 188.226 kb on - strand at 188.226 kb on - strand at 188.226 kb on - strand at 188.226 kb on - strand at 188.226 kb on - strand at 188.228 kb on + strand at 188.228 kb on + strand at 188.228 kb on + strand at 188.229 kb on - strand at 188.229 kb on - strand at 188.229 kb on - strand at 188.367 kb on - strand, within Psyr_0174 at 188.396 kb on + strand, within Psyr_0174 at 188.465 kb on + strand, within Psyr_0174 at 188.465 kb on + strand, within Psyr_0174 at 188.488 kb on - strand, within Psyr_0174 at 188.488 kb on - strand, within Psyr_0174 at 188.488 kb on - strand, within Psyr_0174 at 188.601 kb on + strand, within Psyr_0174 at 188.602 kb on - strand, within Psyr_0174 at 188.841 kb on + strand, within Psyr_0174 at 188.842 kb on - strand, within Psyr_0174 at 188.938 kb on - strand, within Psyr_0174 at 189.020 kb on + strand, within Psyr_0174 at 189.020 kb on + strand, within Psyr_0174 at 189.021 kb on - strand, within Psyr_0174 at 189.021 kb on - strand, within Psyr_0174 at 189.021 kb on - strand, within Psyr_0174 at 189.048 kb on + strand, within Psyr_0174 at 189.105 kb on + strand, within Psyr_0174 at 189.106 kb on - strand, within Psyr_0174 at 189.106 kb on - strand, within Psyr_0174 at 189.106 kb on - strand, within Psyr_0174 at 189.180 kb on + strand, within Psyr_0174 at 189.180 kb on + strand, within Psyr_0174 at 189.180 kb on + strand, within Psyr_0174 at 189.447 kb on - strand at 189.447 kb on - strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.568 kb on + strand at 189.568 kb on + strand at 189.568 kb on + strand at 189.568 kb on + strand at 189.569 kb on - strand at 189.569 kb on - strand at 189.635 kb on + strand at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.798 kb on - strand, within Psyr_0175 at 189.798 kb on - strand, within Psyr_0175 at 189.880 kb on - strand, within Psyr_0175 at 189.880 kb on - strand, within Psyr_0175 at 189.880 kb on - strand, within Psyr_0175 at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.983 kb on + strand at 189.983 kb on + strand at 189.983 kb on + strand at 189.984 kb on - strand at 189.984 kb on - strand at 190.116 kb on + strand at 190.116 kb on + strand at 190.116 kb on + strand at 190.116 kb on + strand at 190.116 kb on + strand at 190.117 kb on - strand at 190.117 kb on - strand at 190.117 kb on - strand at 190.117 kb on - strand at 190.117 kb on - strand at 190.119 kb on + strand at 190.119 kb on + strand at 190.119 kb on + strand at 190.120 kb on - strand at 190.120 kb on - strand at 190.120 kb on - strand at 190.120 kb on - strand at 190.123 kb on - strand at 190.138 kb on + strand at 190.138 kb on + strand at 190.139 kb on - strand at 190.139 kb on - strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.149 kb on + strand at 190.149 kb on + strand at 190.149 kb on + strand at 190.149 kb on + strand at 190.150 kb on - strand at 190.152 kb on - strand at 190.235 kb on - strand, within Psyr_0176 at 190.235 kb on - strand, within Psyr_0176 at 190.235 kb on - strand, within Psyr_0176 at 190.437 kb on + strand at 190.477 kb on - strand at 190.477 kb on - strand at 190.536 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 187,401 + Psyr_0173 0.59 -1.3 187,401 + Psyr_0173 0.59 -1.3 187,401 + Psyr_0173 0.59 -1.9 187,401 + Psyr_0173 0.59 +2.1 187,401 + Psyr_0173 0.59 -1.5 187,401 + Psyr_0173 0.59 +1.1 187,401 + Psyr_0173 0.59 -2.0 187,401 + Psyr_0173 0.59 +0.1 187,401 + Psyr_0173 0.59 -0.9 187,401 + Psyr_0173 0.59 +0.5 187,402 - Psyr_0173 0.59 -0.5 187,402 - Psyr_0173 0.59 -0.2 187,402 - Psyr_0173 0.59 +0.7 187,402 - Psyr_0173 0.59 +0.7 187,402 - Psyr_0173 0.59 +0.9 187,402 - Psyr_0173 0.59 +1.2 187,402 - Psyr_0173 0.59 -0.7 187,402 - Psyr_0173 0.59 -0.1 187,843 - +0.2 187,847 + -1.3 187,847 + -1.5 187,847 + -0.2 187,847 + -0.3 187,847 + -1.2 187,847 + -0.3 187,847 + +0.5 187,847 + -1.7 187,847 + -0.6 187,847 + -1.3 187,847 + -1.4 187,848 - -0.9 187,848 - -1.1 187,848 - +0.0 187,848 - +0.6 187,848 - -0.7 187,848 - +0.1 187,848 - +0.4 187,848 - -1.1 187,848 - +0.3 187,848 - +0.5 187,856 + -1.0 187,935 + -0.8 187,935 + +0.1 187,935 + -0.3 187,935 + -0.5 187,936 - +1.2 187,936 - +0.1 187,936 - -1.5 187,978 + +0.0 187,979 - -0.4 188,047 + +1.1 188,047 + +0.6 188,047 + +1.2 188,047 + +1.0 188,047 + +0.8 188,047 + +1.2 188,048 - -0.7 188,048 - -1.5 188,048 - -1.7 188,048 - +0.9 188,048 - -2.2 188,050 - -1.3 188,066 + +2.1 188,066 + +1.3 188,067 - -0.9 188,067 - -0.2 188,089 + -0.9 188,222 + -1.2 188,223 - -0.2 188,223 - -2.0 188,225 + -0.4 188,225 + -1.4 188,225 + -1.4 188,226 - -0.6 188,226 - -0.2 188,226 - -0.2 188,226 - -0.9 188,226 - -0.8 188,226 - -0.2 188,226 - -3.2 188,228 + -1.7 188,228 + +2.1 188,228 + -1.3 188,229 - +0.1 188,229 - +0.1 188,229 - +0.8 188,367 - Psyr_0174 0.10 -1.1 188,396 + Psyr_0174 0.13 -2.1 188,465 + Psyr_0174 0.18 -2.5 188,465 + Psyr_0174 0.18 -1.1 188,488 - Psyr_0174 0.19 -0.5 188,488 - Psyr_0174 0.19 -0.1 188,488 - Psyr_0174 0.19 -1.2 188,601 + Psyr_0174 0.28 -1.6 188,602 - Psyr_0174 0.28 -0.9 188,841 + Psyr_0174 0.46 -0.1 188,842 - Psyr_0174 0.46 -1.3 188,938 - Psyr_0174 0.53 +0.1 189,020 + Psyr_0174 0.59 -1.6 189,020 + Psyr_0174 0.59 -0.6 189,021 - Psyr_0174 0.59 -2.5 189,021 - Psyr_0174 0.59 -0.3 189,021 - Psyr_0174 0.59 -1.6 189,048 + Psyr_0174 0.61 -0.4 189,105 + Psyr_0174 0.66 -1.0 189,106 - Psyr_0174 0.66 -0.3 189,106 - Psyr_0174 0.66 +0.6 189,106 - Psyr_0174 0.66 -0.6 189,180 + Psyr_0174 0.71 -1.4 189,180 + Psyr_0174 0.71 -0.3 189,180 + Psyr_0174 0.71 -1.7 189,447 - +0.8 189,447 - +0.3 189,468 + -1.6 189,468 + -0.7 189,468 + -1.8 189,468 + -0.3 189,468 + -1.3 189,468 + -0.9 189,468 + +3.6 189,468 + -1.3 189,468 + -0.6 189,468 + +0.5 189,468 + -1.4 189,468 + -0.1 189,469 - +1.9 189,469 - -1.6 189,469 - -1.6 189,469 - -0.5 189,469 - -0.5 189,469 - -1.7 189,469 - -1.1 189,469 - -0.8 189,469 - -1.3 189,469 - -1.7 189,469 - +0.1 189,469 - -1.0 189,469 - -1.3 189,469 - -0.8 189,469 - -0.1 189,469 - -0.2 189,469 - -1.0 189,568 + +1.1 189,568 + -1.3 189,568 + -0.1 189,568 + -0.4 189,569 - -0.3 189,569 - +0.8 189,635 + +1.2 189,783 + Psyr_0175 0.48 -0.7 189,783 + Psyr_0175 0.48 -0.6 189,783 + Psyr_0175 0.48 +0.1 189,783 + Psyr_0175 0.48 -0.9 189,783 + Psyr_0175 0.48 +0.9 189,783 + Psyr_0175 0.48 +0.0 189,783 + Psyr_0175 0.48 -0.8 189,783 + Psyr_0175 0.48 +0.2 189,783 + Psyr_0175 0.48 -1.5 189,783 + Psyr_0175 0.48 -0.2 189,784 - Psyr_0175 0.48 +0.3 189,784 - Psyr_0175 0.48 -1.1 189,784 - Psyr_0175 0.48 -0.5 189,784 - Psyr_0175 0.48 -0.4 189,784 - Psyr_0175 0.48 -1.4 189,798 - Psyr_0175 0.53 +0.8 189,798 - Psyr_0175 0.53 -0.5 189,880 - Psyr_0175 0.83 -0.5 189,880 - Psyr_0175 0.83 -0.8 189,880 - Psyr_0175 0.83 +1.3 189,954 + -0.2 189,954 + -0.6 189,954 + +1.9 189,954 + -0.3 189,954 + +0.9 189,954 + -0.3 189,954 + -1.3 189,954 + -0.8 189,954 + -0.6 189,954 + -0.5 189,954 + -0.0 189,954 + -0.7 189,954 + -0.3 189,954 + -2.3 189,954 + +0.9 189,954 + -0.5 189,955 - +0.4 189,955 - +0.3 189,955 - -1.5 189,955 - +0.8 189,955 - +1.6 189,955 - -0.4 189,955 - -0.9 189,955 - +0.5 189,955 - -0.7 189,955 - -0.7 189,955 - -0.2 189,955 - -1.1 189,955 - -1.2 189,955 - +0.6 189,955 - -1.0 189,956 + -0.0 189,956 + +0.2 189,956 + +0.1 189,956 + -0.6 189,956 + +0.3 189,956 + -0.6 189,956 + +1.1 189,956 + -0.1 189,956 + -1.7 189,956 + -0.6 189,956 + +0.1 189,956 + +0.3 189,956 + -1.4 189,956 + -0.2 189,956 + +1.1 189,956 + -0.1 189,956 + -1.5 189,956 + +0.1 189,957 - -0.7 189,957 - -0.8 189,957 - -0.3 189,957 - -0.2 189,957 - -2.4 189,957 - -1.1 189,957 - -0.0 189,957 - -0.9 189,957 - -0.9 189,957 - +1.0 189,957 - +0.5 189,957 - +0.6 189,957 - -0.5 189,957 - -0.5 189,957 - -0.4 189,957 - -0.5 189,957 - -0.3 189,957 - +0.3 189,957 - -0.4 189,957 - -0.4 189,957 - -0.4 189,957 - -0.4 189,957 - -0.3 189,957 - +0.7 189,957 - -1.1 189,983 + +0.2 189,983 + +1.7 189,983 + +1.5 189,984 - +1.1 189,984 - -1.4 190,116 + -0.5 190,116 + -1.3 190,116 + +0.5 190,116 + -0.4 190,116 + +0.3 190,117 - -0.1 190,117 - +0.4 190,117 - -0.4 190,117 - +0.3 190,117 - -1.1 190,119 + -0.6 190,119 + -1.0 190,119 + +0.2 190,120 - -0.4 190,120 - +0.8 190,120 - -0.0 190,120 - +0.8 190,123 - +0.6 190,138 + -0.7 190,138 + -0.9 190,139 - -0.1 190,139 - -0.5 190,142 + +0.3 190,142 + +3.9 190,142 + +0.2 190,142 + -0.3 190,142 + -0.3 190,142 + -1.4 190,142 + +0.9 190,142 + -0.3 190,142 + +0.2 190,142 + +2.6 190,142 + +0.3 190,142 + -0.8 190,143 - -1.6 190,143 - +0.8 190,143 - -0.4 190,143 - +1.3 190,143 - -2.3 190,143 - -0.3 190,143 - -0.6 190,143 - -0.5 190,143 - -0.8 190,143 - -0.2 190,143 - +1.6 190,149 + -1.2 190,149 + +0.8 190,149 + -0.6 190,149 + +0.5 190,150 - -0.9 190,152 - +0.1 190,235 - Psyr_0176 0.37 -0.7 190,235 - Psyr_0176 0.37 -0.2 190,235 - Psyr_0176 0.37 -1.7 190,437 + -1.0 190,477 - -0.8 190,477 - -0.1 190,536 - -1.0
Or see this region's nucleotide sequence