Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0069 and Psyr_0070 are separated by 199 nucleotides Psyr_0070 and Psyr_0071 overlap by 65 nucleotides Psyr_0071 and Psyr_0072 are separated by 186 nucleotides
Psyr_0069: Psyr_0069 - Na+/Pi-cotransporter:Na/Pi cotransporter II-related protein, at 70,375 to 72,027
_0069
Psyr_0070: Psyr_0070 - hypothetical protein, at 72,227 to 73,060
_0070
Psyr_0071: Psyr_0071 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 72,996 to 74,972
_0071
Psyr_0072: Psyr_0072 - transcriptional regulator, LysR family, at 75,159 to 76,079
_0072
Position (kb) 72
73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 72.055 kb on - strand at 72.103 kb on + strand at 72.103 kb on + strand at 72.104 kb on - strand at 72.104 kb on - strand at 72.111 kb on + strand at 72.111 kb on + strand at 72.112 kb on - strand at 72.114 kb on + strand at 72.114 kb on + strand at 72.114 kb on + strand at 72.114 kb on + strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.123 kb on - strand at 72.162 kb on + strand at 72.162 kb on + strand at 72.163 kb on - strand at 72.175 kb on + strand at 72.186 kb on + strand at 72.243 kb on + strand at 72.262 kb on - strand at 72.262 kb on - strand at 72.320 kb on - strand, within Psyr_0070 at 72.393 kb on + strand, within Psyr_0070 at 72.917 kb on + strand, within Psyr_0070 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.914 kb on + strand, within Psyr_0071 at 73.953 kb on + strand, within Psyr_0071 at 73.953 kb on + strand, within Psyr_0071 at 74.143 kb on + strand, within Psyr_0071 at 74.143 kb on + strand, within Psyr_0071 at 74.144 kb on - strand, within Psyr_0071 at 74.144 kb on - strand, within Psyr_0071 at 74.144 kb on - strand, within Psyr_0071 at 74.144 kb on - strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.146 kb on + strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.147 kb on - strand, within Psyr_0071 at 74.294 kb on + strand, within Psyr_0071 at 74.350 kb on + strand, within Psyr_0071 at 74.350 kb on + strand, within Psyr_0071 at 74.351 kb on - strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.422 kb on + strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.423 kb on - strand, within Psyr_0071 at 74.426 kb on - strand, within Psyr_0071 at 74.440 kb on - strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.455 kb on + strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.456 kb on - strand, within Psyr_0071 at 74.483 kb on - strand, within Psyr_0071 at 74.720 kb on + strand, within Psyr_0071 at 74.891 kb on + strand at 74.894 kb on + strand at 74.894 kb on + strand at 74.895 kb on - strand at 74.903 kb on + strand at 74.903 kb on + strand at 74.933 kb on + strand at 74.933 kb on + strand at 74.972 kb on + strand at 74.972 kb on + strand at 74.972 kb on + strand at 74.972 kb on + strand at 74.972 kb on + strand at 74.972 kb on + strand at 74.972 kb on + strand at 74.973 kb on - strand at 74.973 kb on - strand at 74.973 kb on - strand at 74.973 kb on - strand at 74.973 kb on - strand at 75.016 kb on + strand at 75.016 kb on + strand at 75.036 kb on + strand at 75.036 kb on + strand at 75.036 kb on + strand at 75.036 kb on + strand at 75.036 kb on + strand at 75.036 kb on + strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.037 kb on - strand at 75.049 kb on + strand at 75.049 kb on + strand at 75.049 kb on + strand at 75.049 kb on + strand at 75.054 kb on + strand at 75.055 kb on - strand at 75.101 kb on + strand at 75.101 kb on + strand at 75.101 kb on + strand at 75.101 kb on + strand at 75.102 kb on - strand at 75.161 kb on - strand at 75.168 kb on + strand at 75.168 kb on + strand at 75.271 kb on + strand, within Psyr_0072 at 75.271 kb on + strand, within Psyr_0072 at 75.271 kb on + strand, within Psyr_0072 at 75.272 kb on - strand, within Psyr_0072 at 75.272 kb on - strand, within Psyr_0072 at 75.272 kb on - strand, within Psyr_0072 at 75.272 kb on - strand, within Psyr_0072 at 75.272 kb on - strand, within Psyr_0072 at 75.275 kb on - strand, within Psyr_0072 at 75.275 kb on - strand, within Psyr_0072 at 75.275 kb on - strand, within Psyr_0072 at 75.275 kb on - strand, within Psyr_0072 at 75.639 kb on + strand, within Psyr_0072 at 75.639 kb on + strand, within Psyr_0072 at 75.640 kb on - strand, within Psyr_0072 at 75.803 kb on + strand, within Psyr_0072 at 75.803 kb on + strand, within Psyr_0072 at 75.803 kb on + strand, within Psyr_0072 at 75.803 kb on + strand, within Psyr_0072 at 75.804 kb on - strand, within Psyr_0072 at 75.804 kb on - strand, within Psyr_0072 at 75.905 kb on + strand, within Psyr_0072 at 75.906 kb on - strand, within Psyr_0072 at 75.959 kb on + strand, within Psyr_0072
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 72,055 - -0.8 72,103 + -0.6 72,103 + -0.6 72,104 - -0.1 72,104 - -0.6 72,111 + +1.3 72,111 + +0.6 72,112 - -0.3 72,114 + +0.1 72,114 + +0.6 72,114 + -0.1 72,114 + +0.2 72,115 - +0.1 72,115 - -0.3 72,115 - -0.8 72,115 - -0.2 72,115 - +0.9 72,123 - -1.7 72,162 + +0.7 72,162 + +0.4 72,163 - +0.3 72,175 + -0.2 72,186 + +1.6 72,243 + -0.2 72,262 - -1.0 72,262 - +0.6 72,320 - Psyr_0070 0.11 -0.2 72,393 + Psyr_0070 0.20 +0.9 72,917 + Psyr_0070 0.83 -0.4 73,271 + Psyr_0071 0.14 +0.2 73,271 + Psyr_0071 0.14 +1.4 73,271 + Psyr_0071 0.14 +0.5 73,271 + Psyr_0071 0.14 +0.2 73,271 + Psyr_0071 0.14 +0.0 73,271 + Psyr_0071 0.14 +0.1 73,272 - Psyr_0071 0.14 -0.4 73,272 - Psyr_0071 0.14 +0.4 73,272 - Psyr_0071 0.14 +0.2 73,272 - Psyr_0071 0.14 +0.4 73,914 + Psyr_0071 0.46 -0.6 73,953 + Psyr_0071 0.48 -0.4 73,953 + Psyr_0071 0.48 +0.2 74,143 + Psyr_0071 0.58 +2.0 74,143 + Psyr_0071 0.58 -0.9 74,144 - Psyr_0071 0.58 -1.3 74,144 - Psyr_0071 0.58 +0.5 74,144 - Psyr_0071 0.58 -2.1 74,144 - Psyr_0071 0.58 -0.2 74,146 + Psyr_0071 0.58 +1.2 74,146 + Psyr_0071 0.58 +1.1 74,146 + Psyr_0071 0.58 +0.5 74,146 + Psyr_0071 0.58 -0.6 74,146 + Psyr_0071 0.58 +0.1 74,146 + Psyr_0071 0.58 +0.1 74,146 + Psyr_0071 0.58 +1.6 74,146 + Psyr_0071 0.58 +1.1 74,146 + Psyr_0071 0.58 -0.6 74,146 + Psyr_0071 0.58 -0.6 74,146 + Psyr_0071 0.58 +1.1 74,146 + Psyr_0071 0.58 +0.7 74,146 + Psyr_0071 0.58 -0.6 74,146 + Psyr_0071 0.58 +1.7 74,146 + Psyr_0071 0.58 +0.7 74,147 - Psyr_0071 0.58 +0.6 74,147 - Psyr_0071 0.58 -0.4 74,147 - Psyr_0071 0.58 +1.1 74,147 - Psyr_0071 0.58 +1.0 74,147 - Psyr_0071 0.58 +0.3 74,147 - Psyr_0071 0.58 +0.6 74,147 - Psyr_0071 0.58 -0.1 74,147 - Psyr_0071 0.58 +0.6 74,147 - Psyr_0071 0.58 +1.1 74,147 - Psyr_0071 0.58 -0.3 74,147 - Psyr_0071 0.58 -0.3 74,147 - Psyr_0071 0.58 +2.4 74,294 + Psyr_0071 0.66 -0.4 74,350 + Psyr_0071 0.68 +1.5 74,350 + Psyr_0071 0.68 +0.9 74,351 - Psyr_0071 0.69 -0.3 74,422 + Psyr_0071 0.72 -1.4 74,422 + Psyr_0071 0.72 +0.4 74,422 + Psyr_0071 0.72 -1.1 74,422 + Psyr_0071 0.72 -0.2 74,422 + Psyr_0071 0.72 +1.1 74,422 + Psyr_0071 0.72 +1.1 74,422 + Psyr_0071 0.72 +1.5 74,422 + Psyr_0071 0.72 -0.4 74,422 + Psyr_0071 0.72 -0.3 74,422 + Psyr_0071 0.72 +0.2 74,422 + Psyr_0071 0.72 -0.7 74,422 + Psyr_0071 0.72 +2.4 74,422 + Psyr_0071 0.72 -0.1 74,422 + Psyr_0071 0.72 -0.9 74,422 + Psyr_0071 0.72 -0.1 74,422 + Psyr_0071 0.72 +0.8 74,423 - Psyr_0071 0.72 -0.2 74,423 - Psyr_0071 0.72 -0.7 74,423 - Psyr_0071 0.72 +0.3 74,423 - Psyr_0071 0.72 -0.3 74,423 - Psyr_0071 0.72 +0.5 74,423 - Psyr_0071 0.72 -0.7 74,423 - Psyr_0071 0.72 -0.5 74,423 - Psyr_0071 0.72 +0.2 74,423 - Psyr_0071 0.72 -0.2 74,423 - Psyr_0071 0.72 +0.3 74,423 - Psyr_0071 0.72 +0.2 74,426 - Psyr_0071 0.72 +0.3 74,440 - Psyr_0071 0.73 -1.2 74,455 + Psyr_0071 0.74 -0.9 74,455 + Psyr_0071 0.74 -0.5 74,455 + Psyr_0071 0.74 +1.1 74,455 + Psyr_0071 0.74 +0.5 74,455 + Psyr_0071 0.74 -0.4 74,455 + Psyr_0071 0.74 +0.2 74,455 + Psyr_0071 0.74 +0.3 74,455 + Psyr_0071 0.74 -0.5 74,455 + Psyr_0071 0.74 +0.0 74,455 + Psyr_0071 0.74 -0.0 74,455 + Psyr_0071 0.74 -0.4 74,455 + Psyr_0071 0.74 -1.8 74,455 + Psyr_0071 0.74 +1.7 74,456 - Psyr_0071 0.74 +0.3 74,456 - Psyr_0071 0.74 +0.7 74,456 - Psyr_0071 0.74 +0.2 74,456 - Psyr_0071 0.74 -0.0 74,456 - Psyr_0071 0.74 +1.2 74,456 - Psyr_0071 0.74 +1.4 74,456 - Psyr_0071 0.74 +0.0 74,456 - Psyr_0071 0.74 -0.4 74,456 - Psyr_0071 0.74 +0.4 74,456 - Psyr_0071 0.74 -1.1 74,456 - Psyr_0071 0.74 -1.2 74,456 - Psyr_0071 0.74 +2.3 74,456 - Psyr_0071 0.74 -1.4 74,456 - Psyr_0071 0.74 +0.3 74,456 - Psyr_0071 0.74 +1.5 74,456 - Psyr_0071 0.74 -0.2 74,456 - Psyr_0071 0.74 -0.7 74,483 - Psyr_0071 0.75 +1.6 74,720 + Psyr_0071 0.87 +1.5 74,891 + +0.3 74,894 + -0.0 74,894 + -0.3 74,895 - -0.2 74,903 + +0.2 74,903 + -0.3 74,933 + -0.2 74,933 + +2.0 74,972 + -0.4 74,972 + -1.1 74,972 + +0.6 74,972 + +2.9 74,972 + -1.5 74,972 + -0.6 74,972 + -1.5 74,973 - +0.3 74,973 - -0.6 74,973 - +1.5 74,973 - -0.7 74,973 - +0.9 75,016 + -0.6 75,016 + -1.2 75,036 + +0.6 75,036 + -0.8 75,036 + +0.8 75,036 + -0.2 75,036 + -0.8 75,036 + +2.4 75,037 - -1.3 75,037 - +0.5 75,037 - -0.4 75,037 - +0.1 75,037 - -1.6 75,037 - -0.6 75,037 - -1.1 75,037 - -0.4 75,037 - +0.4 75,037 - -0.5 75,037 - +0.8 75,049 + +0.4 75,049 + +0.1 75,049 + -0.3 75,049 + -0.5 75,054 + +0.7 75,055 - -0.9 75,101 + +0.1 75,101 + +0.5 75,101 + +1.7 75,101 + -1.3 75,102 - -0.4 75,161 - +0.4 75,168 + +0.2 75,168 + -0.2 75,271 + Psyr_0072 0.12 +0.8 75,271 + Psyr_0072 0.12 +0.1 75,271 + Psyr_0072 0.12 +0.1 75,272 - Psyr_0072 0.12 -0.2 75,272 - Psyr_0072 0.12 -0.9 75,272 - Psyr_0072 0.12 +1.2 75,272 - Psyr_0072 0.12 -0.4 75,272 - Psyr_0072 0.12 +1.1 75,275 - Psyr_0072 0.13 +0.2 75,275 - Psyr_0072 0.13 -0.6 75,275 - Psyr_0072 0.13 -1.1 75,275 - Psyr_0072 0.13 -0.1 75,639 + Psyr_0072 0.52 +0.9 75,639 + Psyr_0072 0.52 -1.0 75,640 - Psyr_0072 0.52 -1.1 75,803 + Psyr_0072 0.70 +1.1 75,803 + Psyr_0072 0.70 -0.5 75,803 + Psyr_0072 0.70 +0.1 75,803 + Psyr_0072 0.70 -0.2 75,804 - Psyr_0072 0.70 -0.6 75,804 - Psyr_0072 0.70 -2.4 75,905 + Psyr_0072 0.81 -1.4 75,906 - Psyr_0072 0.81 -0.1 75,959 + Psyr_0072 0.87 +0.7
Or see this region's nucleotide sequence