Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20700

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12460 and BBR_RS20700 are separated by 163 nucleotidesBBR_RS20700 and BBR_RS12470 are separated by 281 nucleotides BBR_RS12460: BBR_RS12460 - LacI family DNA-binding transcriptional regulator, at 544,758 to 545,873 _RS12460 BBR_RS20700: BBR_RS20700 - ribulose phosphate epimerase, at 546,037 to 546,156 _RS20700 BBR_RS12470: BBR_RS12470 - long-chain fatty acid--CoA ligase, at 546,438 to 548,261 _RS12470 Position (kb) 546 547Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 545.044 kb on + strand, within BBR_RS12460at 545.044 kb on + strand, within BBR_RS12460at 545.052 kb on - strand, within BBR_RS12460at 545.054 kb on + strand, within BBR_RS12460at 545.083 kb on - strand, within BBR_RS12460at 545.096 kb on + strand, within BBR_RS12460at 545.096 kb on + strand, within BBR_RS12460at 545.122 kb on + strand, within BBR_RS12460at 545.132 kb on + strand, within BBR_RS12460at 545.137 kb on + strand, within BBR_RS12460at 545.138 kb on - strand, within BBR_RS12460at 545.177 kb on - strand, within BBR_RS12460at 545.177 kb on - strand, within BBR_RS12460at 545.186 kb on + strand, within BBR_RS12460at 545.192 kb on - strand, within BBR_RS12460at 545.268 kb on - strand, within BBR_RS12460at 545.291 kb on + strand, within BBR_RS12460at 545.303 kb on + strand, within BBR_RS12460at 545.313 kb on + strand, within BBR_RS12460at 545.318 kb on + strand, within BBR_RS12460at 545.320 kb on + strand, within BBR_RS12460at 545.338 kb on - strand, within BBR_RS12460at 545.345 kb on - strand, within BBR_RS12460at 545.371 kb on - strand, within BBR_RS12460at 545.371 kb on - strand, within BBR_RS12460at 545.375 kb on + strand, within BBR_RS12460at 545.378 kb on + strand, within BBR_RS12460at 545.419 kb on + strand, within BBR_RS12460at 545.420 kb on + strand, within BBR_RS12460at 545.469 kb on + strand, within BBR_RS12460at 545.477 kb on + strand, within BBR_RS12460at 545.479 kb on + strand, within BBR_RS12460at 545.483 kb on + strand, within BBR_RS12460at 545.547 kb on + strand, within BBR_RS12460at 545.563 kb on + strand, within BBR_RS12460at 545.563 kb on + strand, within BBR_RS12460at 545.624 kb on - strand, within BBR_RS12460at 545.682 kb on + strand, within BBR_RS12460at 545.686 kb on + strand, within BBR_RS12460at 545.687 kb on + strand, within BBR_RS12460at 545.695 kb on - strand, within BBR_RS12460at 545.707 kb on - strand, within BBR_RS12460at 545.742 kb on - strand, within BBR_RS12460at 545.763 kb on - strandat 545.775 kb on - strandat 545.798 kb on - strandat 545.814 kb on + strandat 545.839 kb on - strandat 545.848 kb on + strandat 545.854 kb on + strandat 545.857 kb on - strandat 545.929 kb on + strandat 545.929 kb on + strandat 545.934 kb on + strandat 545.934 kb on + strandat 545.934 kb on + strandat 545.937 kb on + strandat 545.937 kb on - strandat 545.981 kb on + strandat 545.981 kb on + strandat 545.999 kb on - strandat 546.004 kb on - strandat 546.123 kb on - strand, within BBR_RS20700at 546.131 kb on - strand, within BBR_RS20700at 546.131 kb on - strand, within BBR_RS20700at 546.134 kb on + strand, within BBR_RS20700at 546.146 kb on + strandat 546.146 kb on + strandat 546.166 kb on + strandat 546.166 kb on + strandat 546.181 kb on + strandat 546.186 kb on - strandat 546.222 kb on + strandat 546.232 kb on + strandat 546.232 kb on + strandat 546.247 kb on + strandat 546.249 kb on - strandat 546.266 kb on + strandat 546.274 kb on - strandat 546.284 kb on + strandat 546.340 kb on + strandat 546.348 kb on + strandat 546.348 kb on + strandat 546.356 kb on - strandat 546.378 kb on - strandat 546.381 kb on - strandat 546.421 kb on + strandat 546.421 kb on + strandat 546.421 kb on + strandat 546.473 kb on + strandat 546.497 kb on - strandat 546.497 kb on - strandat 546.497 kb on - strandat 546.532 kb on + strandat 546.535 kb on - strandat 546.549 kb on - strandat 546.549 kb on - strandat 546.614 kb on - strandat 546.621 kb on - strand, within BBR_RS12470at 546.646 kb on + strand, within BBR_RS12470at 546.661 kb on + strand, within BBR_RS12470at 546.671 kb on - strand, within BBR_RS12470at 546.684 kb on - strand, within BBR_RS12470at 546.694 kb on - strand, within BBR_RS12470at 546.698 kb on - strand, within BBR_RS12470at 546.709 kb on - strand, within BBR_RS12470at 546.716 kb on + strand, within BBR_RS12470at 546.727 kb on + strand, within BBR_RS12470at 546.727 kb on + strand, within BBR_RS12470at 546.727 kb on + strand, within BBR_RS12470at 546.735 kb on - strand, within BBR_RS12470at 546.735 kb on - strand, within BBR_RS12470at 546.756 kb on - strand, within BBR_RS12470at 546.767 kb on + strand, within BBR_RS12470at 546.767 kb on - strand, within BBR_RS12470at 546.767 kb on - strand, within BBR_RS12470at 546.775 kb on - strand, within BBR_RS12470at 546.787 kb on + strand, within BBR_RS12470at 546.791 kb on + strand, within BBR_RS12470at 546.795 kb on - strand, within BBR_RS12470at 546.812 kb on - strand, within BBR_RS12470at 546.817 kb on - strand, within BBR_RS12470at 546.818 kb on + strand, within BBR_RS12470at 546.919 kb on + strand, within BBR_RS12470at 546.927 kb on - strand, within BBR_RS12470at 546.932 kb on - strand, within BBR_RS12470at 546.938 kb on - strand, within BBR_RS12470at 547.005 kb on - strand, within BBR_RS12470at 547.058 kb on - strand, within BBR_RS12470at 547.059 kb on - strand, within BBR_RS12470at 547.071 kb on - strand, within BBR_RS12470at 547.098 kb on + strand, within BBR_RS12470at 547.128 kb on + strand, within BBR_RS12470at 547.131 kb on - strand, within BBR_RS12470at 547.153 kb on - strand, within BBR_RS12470

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day2
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545,044 + BBR_RS12460 0.26 +0.7
545,044 + BBR_RS12460 0.26 -1.4
545,052 - BBR_RS12460 0.26 -0.5
545,054 + BBR_RS12460 0.27 +1.6
545,083 - BBR_RS12460 0.29 +0.5
545,096 + BBR_RS12460 0.30 +2.2
545,096 + BBR_RS12460 0.30 -1.3
545,122 + BBR_RS12460 0.33 -2.4
545,132 + BBR_RS12460 0.34 +0.6
545,137 + BBR_RS12460 0.34 -2.5
545,138 - BBR_RS12460 0.34 +1.8
545,177 - BBR_RS12460 0.38 -0.4
545,177 - BBR_RS12460 0.38 +1.0
545,186 + BBR_RS12460 0.38 +0.5
545,192 - BBR_RS12460 0.39 -1.2
545,268 - BBR_RS12460 0.46 -2.8
545,291 + BBR_RS12460 0.48 -2.2
545,303 + BBR_RS12460 0.49 +2.0
545,313 + BBR_RS12460 0.50 +0.9
545,318 + BBR_RS12460 0.50 -1.7
545,320 + BBR_RS12460 0.50 +1.5
545,338 - BBR_RS12460 0.52 -1.0
545,345 - BBR_RS12460 0.53 +0.1
545,371 - BBR_RS12460 0.55 +3.4
545,371 - BBR_RS12460 0.55 -0.3
545,375 + BBR_RS12460 0.55 -2.4
545,378 + BBR_RS12460 0.56 -0.2
545,419 + BBR_RS12460 0.59 +0.1
545,420 + BBR_RS12460 0.59 +0.9
545,469 + BBR_RS12460 0.64 -0.2
545,477 + BBR_RS12460 0.64 -0.4
545,479 + BBR_RS12460 0.65 +1.8
545,483 + BBR_RS12460 0.65 +0.2
545,547 + BBR_RS12460 0.71 +0.9
545,563 + BBR_RS12460 0.72 -0.1
545,563 + BBR_RS12460 0.72 +0.9
545,624 - BBR_RS12460 0.78 +0.2
545,682 + BBR_RS12460 0.83 -0.4
545,686 + BBR_RS12460 0.83 -0.1
545,687 + BBR_RS12460 0.83 -1.2
545,695 - BBR_RS12460 0.84 +1.0
545,707 - BBR_RS12460 0.85 -1.7
545,742 - BBR_RS12460 0.88 +0.6
545,763 - -0.3
545,775 - -0.4
545,798 - +0.8
545,814 + -2.4
545,839 - -0.9
545,848 + +0.7
545,854 + +1.0
545,857 - -2.2
545,929 + +3.4
545,929 + -0.5
545,934 + +0.8
545,934 + +1.8
545,934 + +0.3
545,937 + -2.9
545,937 - +0.2
545,981 + +1.9
545,981 + +0.1
545,999 - -3.6
546,004 - +1.4
546,123 - BBR_RS20700 0.72 -2.1
546,131 - BBR_RS20700 0.78 -0.2
546,131 - BBR_RS20700 0.78 +0.2
546,134 + BBR_RS20700 0.81 -3.0
546,146 + +2.1
546,146 + -3.0
546,166 + +1.2
546,166 + +1.7
546,181 + -0.4
546,186 - -1.2
546,222 + +0.4
546,232 + -2.2
546,232 + -2.7
546,247 + -2.7
546,249 - +0.5
546,266 + +1.0
546,274 - +0.7
546,284 + +0.0
546,340 + +0.2
546,348 + +1.0
546,348 + +0.2
546,356 - +0.7
546,378 - -2.7
546,381 - -2.5
546,421 + +1.8
546,421 + -2.8
546,421 + +0.2
546,473 + -1.2
546,497 - +1.6
546,497 - +0.1
546,497 - +0.5
546,532 + +1.0
546,535 - +0.3
546,549 - +1.3
546,549 - +2.3
546,614 - -1.6
546,621 - BBR_RS12470 0.10 +2.0
546,646 + BBR_RS12470 0.11 -1.7
546,661 + BBR_RS12470 0.12 -3.3
546,671 - BBR_RS12470 0.13 -2.1
546,684 - BBR_RS12470 0.13 -2.8
546,694 - BBR_RS12470 0.14 +1.0
546,698 - BBR_RS12470 0.14 +1.3
546,709 - BBR_RS12470 0.15 +1.1
546,716 + BBR_RS12470 0.15 -2.4
546,727 + BBR_RS12470 0.16 -1.6
546,727 + BBR_RS12470 0.16 +2.1
546,727 + BBR_RS12470 0.16 -2.1
546,735 - BBR_RS12470 0.16 +0.4
546,735 - BBR_RS12470 0.16 +1.4
546,756 - BBR_RS12470 0.17 +1.2
546,767 + BBR_RS12470 0.18 +2.3
546,767 - BBR_RS12470 0.18 +1.5
546,767 - BBR_RS12470 0.18 -2.7
546,775 - BBR_RS12470 0.18 -1.7
546,787 + BBR_RS12470 0.19 +2.4
546,791 + BBR_RS12470 0.19 -2.1
546,795 - BBR_RS12470 0.20 -0.6
546,812 - BBR_RS12470 0.21 +0.7
546,817 - BBR_RS12470 0.21 +1.2
546,818 + BBR_RS12470 0.21 -1.8
546,919 + BBR_RS12470 0.26 +0.8
546,927 - BBR_RS12470 0.27 -1.5
546,932 - BBR_RS12470 0.27 -2.8
546,938 - BBR_RS12470 0.27 +0.5
547,005 - BBR_RS12470 0.31 -0.6
547,058 - BBR_RS12470 0.34 +2.1
547,059 - BBR_RS12470 0.34 -1.4
547,071 - BBR_RS12470 0.35 +0.0
547,098 + BBR_RS12470 0.36 +3.0
547,128 + BBR_RS12470 0.38 -0.5
547,131 - BBR_RS12470 0.38 -1.3
547,153 - BBR_RS12470 0.39 -1.8

Or see this region's nucleotide sequence