Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18445

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse1; day2
1,921,915	+		BBR_RS18435	0.25	+1.8
1,921,923	-		BBR_RS18435	0.27	-0.3
1,921,923	-		BBR_RS18435	0.27	+1.7
1,921,960	+		BBR_RS18435	0.36	+1.9
1,922,018	+		BBR_RS18435	0.50	+0.5
1,922,018	+		BBR_RS18435	0.50	-1.8
1,922,026	-		BBR_RS18435	0.52	+1.9
1,922,040	-		BBR_RS18435	0.56	-2.5
1,922,053	+		BBR_RS18435	0.59	+2.6
1,922,061	-		BBR_RS18435	0.61	-1.7
1,922,061	-		BBR_RS18435	0.61	-2.4
1,922,061	-		BBR_RS18435	0.61	+0.9
1,922,061	-		BBR_RS18435	0.61	+0.4
1,922,094	+		BBR_RS18435	0.69	+0.6
1,922,099	+		BBR_RS18435	0.70	+0.3
1,922,107	-		BBR_RS18435	0.72	+0.3
1,922,159	+		BBR_RS18435	0.85	+1.2
1,922,164	+		BBR_RS18435	0.86	+0.9
1,922,172	-		BBR_RS18435	0.88	-2.2
1,922,200	+				+1.5
1,922,200	-				+1.2
1,922,230	+				-1.8
1,922,255	+				+1.9
1,922,277	-				-3.5
1,922,277	-				+0.5
1,922,277	-				+1.6
1,922,291	+				+1.3
1,922,299	-				+0.0
1,922,305	+				+2.4
1,922,321	+				+1.0
1,922,333	+				-0.4
1,922,333	+				-0.1
1,922,350	-				+0.5
1,922,351	-				+2.2
1,922,355	-				-0.8
1,922,357	+				+1.4
1,922,358	+				-0.0
1,922,365	-				+0.9
1,922,365	-				-2.3
1,922,365	-				-1.8
1,922,365	-				+1.3
1,922,365	-				+0.6
1,922,365	-				-1.7
1,922,365	-				+1.9
1,922,365	-				+0.4
1,922,367	+				-0.9
1,922,386	-				+0.9
1,922,422	+				+0.6
1,922,430	-				+4.1
1,922,430	-				+2.1
1,922,442	+				+1.2
1,922,450	-				-0.1
1,922,450	-				-2.2
1,922,477	+				+0.9
1,922,480	-				+1.5
1,922,487	+				-2.3
1,922,489	+				-1.0
1,922,533	-				-2.1
1,922,584	+		BBR_RS18440	0.20	-2.0
1,922,584	+		BBR_RS18440	0.20	+1.4
1,922,590	+		BBR_RS18440	0.21	+0.3
1,922,592	+		BBR_RS18440	0.22	-1.0
1,922,592	-		BBR_RS18440	0.22	+0.6
1,922,600	+		BBR_RS18440	0.24	+3.0
1,922,600	+		BBR_RS18440	0.24	-2.1
1,922,618	-		BBR_RS18440	0.29	+2.6
1,922,640	+		BBR_RS18440	0.35	+2.1
1,922,640	+		BBR_RS18440	0.35	-1.6
1,922,713	-		BBR_RS18440	0.54	+2.0
1,922,768	-		BBR_RS18440	0.69	-0.0
1,922,805	-		BBR_RS18440	0.79	-2.8
1,922,867	-				+1.8
1,922,867	-				+1.0
1,922,900	+				+0.3
1,922,933	+				-1.9
1,922,933	+				-1.7
1,922,933	-				+0.6
1,922,993	+		BBR_RS18445	0.24	-1.6
1,922,993	+		BBR_RS18445	0.24	-2.6
1,923,006	-		BBR_RS18445	0.28	+0.8
1,923,020	+		BBR_RS18445	0.32	-2.4
1,923,020	+		BBR_RS18445	0.32	-0.8
1,923,043	-		BBR_RS18445	0.39	+2.2
1,923,068	+		BBR_RS18445	0.47	+0.2
1,923,072	-		BBR_RS18445	0.48	-1.6
1,923,084	-		BBR_RS18445	0.52	+1.5
1,923,116	+		BBR_RS18445	0.62	+0.2
1,923,144	+		BBR_RS18445	0.70	-0.2
1,923,149	+		BBR_RS18445	0.72	+0.6
1,923,153	-		BBR_RS18445	0.73	-1.9
1,923,155	+		BBR_RS18445	0.74	-2.8
1,923,163	-		BBR_RS18445	0.76	+0.7
1,923,208	+				+0.4
1,923,223	-				+2.7
1,923,223	-				-0.0
1,923,271	-				-1.0
1,923,277	+				+2.0
1,923,315	+				+1.4
1,923,317	-				-1.7
1,923,318	-				+0.9
1,923,323	-				+2.2
1,923,349	+				-1.4
1,923,446	+				+2.5
1,923,456	-				+0.4
1,923,471	+				+0.0
1,923,481	+				-3.0
1,923,489	-		BBR_RS18450	0.10	+0.8
1,923,523	-		BBR_RS18450	0.13	-1.4
1,923,537	-		BBR_RS18450	0.13	-0.2
1,923,537	-		BBR_RS18450	0.13	-1.6
1,923,539	+		BBR_RS18450	0.14	+0.9
1,923,544	-		BBR_RS18450	0.14	-3.3
1,923,544	-		BBR_RS18450	0.14	+0.4
1,923,547	-		BBR_RS18450	0.14	-2.6
1,923,622	+		BBR_RS18450	0.19	+0.8
1,923,622	+		BBR_RS18450	0.19	-2.3
1,923,731	+		BBR_RS18450	0.26	-2.4
1,923,735	+		BBR_RS18450	0.26	+0.5
1,923,735	+		BBR_RS18450	0.26	+0.6
1,923,739	-		BBR_RS18450	0.26	+1.8
1,923,739	-		BBR_RS18450	0.26	-2.8
1,923,743	-		BBR_RS18450	0.27	-2.5
1,923,743	-		BBR_RS18450	0.27	+1.1
1,923,746	+		BBR_RS18450	0.27	-2.0
1,923,749	-		BBR_RS18450	0.27	+2.0
1,923,759	-		BBR_RS18450	0.28	+1.4
1,923,769	-		BBR_RS18450	0.28	-1.7
1,923,779	+		BBR_RS18450	0.29	+1.1
1,923,785	-		BBR_RS18450	0.29	-3.0
1,923,785	-		BBR_RS18450	0.29	-2.9
1,923,838	+		BBR_RS18450	0.33	-3.5
1,923,838	+		BBR_RS18450	0.33	+1.2
1,923,838	+		BBR_RS18450	0.33	+1.9
1,923,838	+		BBR_RS18450	0.33	-3.9
1,923,838	+		BBR_RS18450	0.33	-3.0
1,923,838	+		BBR_RS18450	0.33	+0.6
1,923,845	+		BBR_RS18450	0.33	-3.8
1,923,845	+		BBR_RS18450	0.33	-0.0
1,923,845	+		BBR_RS18450	0.33	+1.7
1,923,845	+		BBR_RS18450	0.33	-1.8
1,923,845	+		BBR_RS18450	0.33	-0.6
1,923,845	+		BBR_RS18450	0.33	-1.2
1,923,845	+		BBR_RS18450	0.33	+1.6
1,923,845	+		BBR_RS18450	0.33	+0.8
1,923,846	-		BBR_RS18450	0.33	+1.4
1,923,846	-		BBR_RS18450	0.33	+2.7
1,923,846	-		BBR_RS18450	0.33	-1.4
1,923,846	-		BBR_RS18450	0.33	-2.7
1,923,846	-		BBR_RS18450	0.33	+0.4
1,923,846	-		BBR_RS18450	0.33	-1.1
1,923,846	-		BBR_RS18450	0.33	+0.4
1,923,853	-		BBR_RS18450	0.34	-2.4
1,923,853	-		BBR_RS18450	0.34	-0.9
1,923,853	-		BBR_RS18450	0.34	+0.7
1,923,853	-		BBR_RS18450	0.34	+1.1
1,923,853	-		BBR_RS18450	0.34	+0.3
1,923,853	-		BBR_RS18450	0.34	+1.2
1,923,853	-		BBR_RS18450	0.34	-1.2
1,923,853	-		BBR_RS18450	0.34	+0.5
1,923,858	-		BBR_RS18450	0.34	+0.5
1,923,858	-		BBR_RS18450	0.34	-1.2
1,923,867	-		BBR_RS18450	0.34	-0.1
1,923,873	+		BBR_RS18450	0.35	-2.2
1,923,873	+		BBR_RS18450	0.35	+0.6
1,923,940	-		BBR_RS18450	0.39	+0.2
1,923,959	-		BBR_RS18450	0.40	+0.4
1,923,965	+		BBR_RS18450	0.41	+2.5
1,924,027	+		BBR_RS18450	0.45	-0.3
1,924,037	+		BBR_RS18450	0.45	+2.7
1,924,042	+		BBR_RS18450	0.46	+1.4
1,924,043	+		BBR_RS18450	0.46	+0.3
1,924,043	+		BBR_RS18450	0.46	+0.3
1,924,097	-		BBR_RS18450	0.49	+2.1
1,924,097	-		BBR_RS18450	0.49	+1.7
1,924,130	-		BBR_RS18450	0.51	+2.7
1,924,171	-		BBR_RS18450	0.54	+1.9
1,924,171	-		BBR_RS18450	0.54	-2.2
1,924,212	-		BBR_RS18450	0.56	-2.7
1,924,222	-		BBR_RS18450	0.57	-1.1
1,924,224	+		BBR_RS18450	0.57	+2.8
1,924,224	+		BBR_RS18450	0.57	-1.9
1,924,227	-		BBR_RS18450	0.57	-1.6
1,924,232	-		BBR_RS18450	0.58	+1.9
1,924,233	+		BBR_RS18450	0.58	-1.8