Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13880

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13875 and BBR_RS13880 are separated by 27 nucleotidesBBR_RS13880 and BBR_RS13885 are separated by 96 nucleotides BBR_RS13875: BBR_RS13875 - phenylalanine--tRNA ligase subunit beta, at 891,515 to 894,124 _RS13875 BBR_RS13880: BBR_RS13880 - hypothetical protein, at 894,152 to 894,808 _RS13880 BBR_RS13885: BBR_RS13885 - N-acetyl-gamma-glutamyl-phosphate reductase, at 894,905 to 895,999 _RS13885 Position (kb) 894 895Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 894.126 kb on - strandat 894.128 kb on + strandat 894.128 kb on - strandat 894.128 kb on - strandat 894.164 kb on + strandat 894.174 kb on - strandat 894.174 kb on - strandat 894.174 kb on - strandat 894.199 kb on - strandat 894.234 kb on - strand, within BBR_RS13880at 894.245 kb on - strand, within BBR_RS13880at 894.245 kb on - strand, within BBR_RS13880at 894.296 kb on + strand, within BBR_RS13880at 894.306 kb on - strand, within BBR_RS13880at 894.345 kb on - strand, within BBR_RS13880at 894.384 kb on - strand, within BBR_RS13880at 894.389 kb on + strand, within BBR_RS13880at 894.397 kb on - strand, within BBR_RS13880at 894.413 kb on + strand, within BBR_RS13880at 894.448 kb on + strand, within BBR_RS13880at 894.483 kb on - strand, within BBR_RS13880at 894.528 kb on - strand, within BBR_RS13880at 894.557 kb on - strand, within BBR_RS13880at 894.557 kb on - strand, within BBR_RS13880at 894.568 kb on + strand, within BBR_RS13880at 894.568 kb on + strand, within BBR_RS13880at 894.604 kb on - strand, within BBR_RS13880at 894.653 kb on - strand, within BBR_RS13880at 894.673 kb on + strand, within BBR_RS13880at 894.682 kb on + strand, within BBR_RS13880at 894.682 kb on + strand, within BBR_RS13880at 894.692 kb on - strand, within BBR_RS13880at 894.698 kb on - strand, within BBR_RS13880at 894.777 kb on - strandat 894.798 kb on + strandat 894.803 kb on + strandat 894.803 kb on + strandat 894.808 kb on + strandat 894.811 kb on - strandat 894.811 kb on - strandat 894.833 kb on + strandat 894.909 kb on - strandat 894.949 kb on - strandat 894.999 kb on + strandat 895.087 kb on + strand, within BBR_RS13885at 895.087 kb on + strand, within BBR_RS13885at 895.092 kb on + strand, within BBR_RS13885at 895.095 kb on - strand, within BBR_RS13885at 895.095 kb on - strand, within BBR_RS13885at 895.156 kb on + strand, within BBR_RS13885at 895.193 kb on + strand, within BBR_RS13885at 895.281 kb on + strand, within BBR_RS13885at 895.283 kb on + strand, within BBR_RS13885at 895.342 kb on + strand, within BBR_RS13885at 895.342 kb on + strand, within BBR_RS13885at 895.342 kb on + strand, within BBR_RS13885at 895.344 kb on - strand, within BBR_RS13885at 895.371 kb on + strand, within BBR_RS13885at 895.383 kb on + strand, within BBR_RS13885at 895.386 kb on + strand, within BBR_RS13885at 895.415 kb on + strand, within BBR_RS13885at 895.421 kb on + strand, within BBR_RS13885at 895.429 kb on - strand, within BBR_RS13885at 895.465 kb on - strand, within BBR_RS13885at 895.468 kb on + strand, within BBR_RS13885at 895.542 kb on - strand, within BBR_RS13885at 895.542 kb on - strand, within BBR_RS13885at 895.600 kb on + strand, within BBR_RS13885at 895.627 kb on + strand, within BBR_RS13885at 895.663 kb on + strand, within BBR_RS13885at 895.663 kb on + strand, within BBR_RS13885at 895.681 kb on - strand, within BBR_RS13885at 895.708 kb on + strand, within BBR_RS13885at 895.708 kb on + strand, within BBR_RS13885at 895.708 kb on + strand, within BBR_RS13885at 895.708 kb on + strand, within BBR_RS13885at 895.716 kb on - strand, within BBR_RS13885at 895.716 kb on - strand, within BBR_RS13885at 895.723 kb on + strand, within BBR_RS13885at 895.763 kb on + strand, within BBR_RS13885at 895.771 kb on - strand, within BBR_RS13885at 895.771 kb on - strand, within BBR_RS13885at 895.771 kb on - strand, within BBR_RS13885at 895.794 kb on - strand, within BBR_RS13885at 895.806 kb on + strand, within BBR_RS13885

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day2
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894,126 - +2.3
894,128 + -2.2
894,128 - -1.8
894,128 - -2.0
894,164 + +3.0
894,174 - +0.4
894,174 - -0.3
894,174 - +1.3
894,199 - +2.9
894,234 - BBR_RS13880 0.12 -1.0
894,245 - BBR_RS13880 0.14 +1.7
894,245 - BBR_RS13880 0.14 +1.5
894,296 + BBR_RS13880 0.22 -1.3
894,306 - BBR_RS13880 0.23 -1.3
894,345 - BBR_RS13880 0.29 -1.5
894,384 - BBR_RS13880 0.35 +1.2
894,389 + BBR_RS13880 0.36 -2.3
894,397 - BBR_RS13880 0.37 +1.7
894,413 + BBR_RS13880 0.40 -3.1
894,448 + BBR_RS13880 0.45 -2.7
894,483 - BBR_RS13880 0.50 -0.7
894,528 - BBR_RS13880 0.57 -0.4
894,557 - BBR_RS13880 0.62 -1.7
894,557 - BBR_RS13880 0.62 -2.1
894,568 + BBR_RS13880 0.63 +0.5
894,568 + BBR_RS13880 0.63 -0.3
894,604 - BBR_RS13880 0.69 -2.1
894,653 - BBR_RS13880 0.76 -2.1
894,673 + BBR_RS13880 0.79 -3.0
894,682 + BBR_RS13880 0.81 -1.2
894,682 + BBR_RS13880 0.81 -2.4
894,692 - BBR_RS13880 0.82 +0.9
894,698 - BBR_RS13880 0.83 -0.9
894,777 - +1.9
894,798 + +1.7
894,803 + +0.9
894,803 + -1.5
894,808 + +0.5
894,811 - +0.9
894,811 - -1.4
894,833 + -2.2
894,909 - -2.2
894,949 - +3.7
894,999 + -1.7
895,087 + BBR_RS13885 0.17 -1.1
895,087 + BBR_RS13885 0.17 -2.6
895,092 + BBR_RS13885 0.17 -2.9
895,095 - BBR_RS13885 0.17 -2.5
895,095 - BBR_RS13885 0.17 -0.1
895,156 + BBR_RS13885 0.23 +1.9
895,193 + BBR_RS13885 0.26 -2.9
895,281 + BBR_RS13885 0.34 -0.3
895,283 + BBR_RS13885 0.35 +0.2
895,342 + BBR_RS13885 0.40 -1.8
895,342 + BBR_RS13885 0.40 +0.7
895,342 + BBR_RS13885 0.40 +2.3
895,344 - BBR_RS13885 0.40 -1.3
895,371 + BBR_RS13885 0.43 -0.5
895,383 + BBR_RS13885 0.44 +1.4
895,386 + BBR_RS13885 0.44 +0.8
895,415 + BBR_RS13885 0.47 -1.3
895,421 + BBR_RS13885 0.47 -1.5
895,429 - BBR_RS13885 0.48 -0.4
895,465 - BBR_RS13885 0.51 -0.4
895,468 + BBR_RS13885 0.51 +1.5
895,542 - BBR_RS13885 0.58 -1.9
895,542 - BBR_RS13885 0.58 -2.4
895,600 + BBR_RS13885 0.63 +2.9
895,627 + BBR_RS13885 0.66 -2.3
895,663 + BBR_RS13885 0.69 -2.6
895,663 + BBR_RS13885 0.69 +1.9
895,681 - BBR_RS13885 0.71 -2.0
895,708 + BBR_RS13885 0.73 -1.7
895,708 + BBR_RS13885 0.73 +0.9
895,708 + BBR_RS13885 0.73 +2.3
895,708 + BBR_RS13885 0.73 -1.9
895,716 - BBR_RS13885 0.74 +0.7
895,716 - BBR_RS13885 0.74 -3.0
895,723 + BBR_RS13885 0.75 -1.7
895,763 + BBR_RS13885 0.78 +0.2
895,771 - BBR_RS13885 0.79 +0.7
895,771 - BBR_RS13885 0.79 -3.9
895,771 - BBR_RS13885 0.79 -2.1
895,794 - BBR_RS13885 0.81 -0.9
895,806 + BBR_RS13885 0.82 -2.5

Or see this region's nucleotide sequence