Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12775

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS12760 and BBR_RS12770 are separated by 70 nucleotidesBBR_RS12770 and BBR_RS12775 are separated by 469 nucleotidesBBR_RS12775 and BBR_RS12780 are separated by 0 nucleotidesBBR_RS12780 and BBR_RS12785 are separated by 63 nucleotides BBR_RS12760: BBR_RS12760 - hypothetical protein, at 615,670 to 616,906 _RS12760 BBR_RS12770: BBR_RS12770 - hypothetical protein, at 616,977 to 617,183 _RS12770 BBR_RS12775: BBR_RS12775 - hypothetical protein, at 617,653 to 618,066 _RS12775 BBR_RS12780: BBR_RS12780 - hypothetical protein, at 618,067 to 618,603 _RS12780 BBR_RS12785: BBR_RS12785 - transcriptional regulator, at 618,667 to 619,161 _RS12785 Position (kb) 617 618 619Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 616.689 kb on + strand, within BBR_RS12760at 616.706 kb on - strand, within BBR_RS12760at 616.721 kb on - strand, within BBR_RS12760at 616.779 kb on - strand, within BBR_RS12760at 616.799 kb on + strandat 616.799 kb on + strandat 616.799 kb on + strandat 616.807 kb on - strandat 616.807 kb on - strandat 616.814 kb on - strandat 616.814 kb on - strandat 616.825 kb on - strandat 616.845 kb on - strandat 616.871 kb on + strandat 616.879 kb on - strandat 616.887 kb on + strandat 616.891 kb on - strandat 616.899 kb on - strandat 617.039 kb on + strand, within BBR_RS12770at 617.053 kb on + strand, within BBR_RS12770at 617.067 kb on + strand, within BBR_RS12770at 617.085 kb on + strand, within BBR_RS12770at 617.093 kb on - strand, within BBR_RS12770at 617.103 kb on - strand, within BBR_RS12770at 617.143 kb on - strand, within BBR_RS12770at 617.177 kb on + strandat 617.215 kb on - strandat 617.215 kb on - strandat 617.221 kb on - strandat 617.261 kb on + strandat 617.263 kb on + strandat 617.294 kb on - strandat 617.343 kb on + strandat 617.345 kb on + strandat 617.345 kb on + strandat 617.345 kb on + strandat 617.351 kb on - strandat 617.353 kb on + strandat 617.353 kb on + strandat 617.415 kb on + strandat 617.439 kb on + strandat 617.454 kb on - strandat 617.462 kb on - strandat 617.529 kb on + strandat 617.555 kb on - strandat 617.560 kb on + strandat 617.601 kb on - strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.672 kb on + strandat 617.680 kb on - strandat 617.735 kb on + strand, within BBR_RS12775at 617.803 kb on - strand, within BBR_RS12775at 617.863 kb on + strand, within BBR_RS12775at 617.865 kb on - strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.936 kb on + strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 618.019 kb on + strand, within BBR_RS12775at 618.021 kb on + strand, within BBR_RS12775at 618.038 kb on + strandat 618.055 kb on + strandat 618.110 kb on - strandat 618.115 kb on - strandat 618.157 kb on - strand, within BBR_RS12780at 618.169 kb on - strand, within BBR_RS12780at 618.264 kb on + strand, within BBR_RS12780at 618.317 kb on + strand, within BBR_RS12780at 618.317 kb on + strand, within BBR_RS12780at 618.333 kb on - strand, within BBR_RS12780at 618.335 kb on + strand, within BBR_RS12780at 618.335 kb on + strand, within BBR_RS12780at 618.335 kb on + strand, within BBR_RS12780at 618.343 kb on - strand, within BBR_RS12780at 618.408 kb on + strand, within BBR_RS12780at 618.408 kb on + strand, within BBR_RS12780at 618.434 kb on + strand, within BBR_RS12780at 618.449 kb on + strand, within BBR_RS12780at 618.481 kb on + strand, within BBR_RS12780at 618.588 kb on + strandat 618.593 kb on + strandat 618.657 kb on + strandat 618.657 kb on + strandat 618.665 kb on - strandat 618.763 kb on + strand, within BBR_RS12785at 618.947 kb on + strand, within BBR_RS12785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day2
remove
616,689 + BBR_RS12760 0.82 +0.6
616,706 - BBR_RS12760 0.84 -0.5
616,721 - BBR_RS12760 0.85 +0.9
616,779 - BBR_RS12760 0.90 +1.6
616,799 + -1.1
616,799 + +1.8
616,799 + +0.5
616,807 - -0.3
616,807 - +0.6
616,814 - -2.3
616,814 - +1.5
616,825 - +0.9
616,845 - -1.9
616,871 + -1.7
616,879 - -2.3
616,887 + -2.1
616,891 - -1.9
616,899 - +0.2
617,039 + BBR_RS12770 0.30 -0.9
617,053 + BBR_RS12770 0.37 +1.3
617,067 + BBR_RS12770 0.43 +2.5
617,085 + BBR_RS12770 0.52 -0.4
617,093 - BBR_RS12770 0.56 -3.0
617,103 - BBR_RS12770 0.61 -3.1
617,143 - BBR_RS12770 0.80 -3.4
617,177 + +2.8
617,215 - +1.3
617,215 - -2.9
617,221 - -2.4
617,261 + -1.4
617,263 + -3.0
617,294 - +2.9
617,343 + -1.7
617,345 + +0.0
617,345 + -2.6
617,345 + +0.3
617,351 - +0.3
617,353 + +1.0
617,353 + -1.1
617,415 + +1.6
617,439 + -1.7
617,454 - -2.5
617,462 - -0.8
617,529 + +0.2
617,555 - +0.8
617,560 + -0.5
617,601 - -2.9
617,627 + +0.1
617,627 + -2.4
617,627 + -1.8
617,627 + -3.0
617,627 + -1.3
617,672 + +1.1
617,680 - +1.9
617,735 + BBR_RS12775 0.20 -2.7
617,803 - BBR_RS12775 0.36 -1.2
617,863 + BBR_RS12775 0.51 -1.5
617,865 - BBR_RS12775 0.51 -1.7
617,928 + BBR_RS12775 0.66 +0.9
617,928 + BBR_RS12775 0.66 +1.8
617,928 + BBR_RS12775 0.66 -1.9
617,928 + BBR_RS12775 0.66 -0.9
617,928 + BBR_RS12775 0.66 -0.3
617,936 + BBR_RS12775 0.68 -1.9
617,936 - BBR_RS12775 0.68 -1.4
617,936 - BBR_RS12775 0.68 -2.2
617,936 - BBR_RS12775 0.68 -2.0
618,019 + BBR_RS12775 0.88 -2.3
618,021 + BBR_RS12775 0.89 -2.3
618,038 + +1.9
618,055 + -1.9
618,110 - +1.0
618,115 - -1.1
618,157 - BBR_RS12780 0.17 +1.5
618,169 - BBR_RS12780 0.19 +1.2
618,264 + BBR_RS12780 0.37 -2.3
618,317 + BBR_RS12780 0.47 -2.3
618,317 + BBR_RS12780 0.47 +0.7
618,333 - BBR_RS12780 0.50 +0.4
618,335 + BBR_RS12780 0.50 +0.1
618,335 + BBR_RS12780 0.50 +2.1
618,335 + BBR_RS12780 0.50 -1.9
618,343 - BBR_RS12780 0.51 +0.1
618,408 + BBR_RS12780 0.64 +0.6
618,408 + BBR_RS12780 0.64 -2.5
618,434 + BBR_RS12780 0.68 +0.5
618,449 + BBR_RS12780 0.71 -2.2
618,481 + BBR_RS12780 0.77 +1.3
618,588 + -2.2
618,593 + -0.1
618,657 + -1.9
618,657 + -2.5
618,665 - +1.1
618,763 + BBR_RS12785 0.19 +1.3
618,947 + BBR_RS12785 0.57 -4.1

Or see this region's nucleotide sequence