Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11675

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS11670 and BBR_RS11675 overlap by 4 nucleotidesBBR_RS11675 and BBR_RS11680 are separated by 88 nucleotides BBR_RS11670: BBR_RS11670 - DNA recombination protein RmuC, at 372,828 to 374,255 _RS11670 BBR_RS11675: BBR_RS11675 - hypothetical protein, at 374,252 to 374,881 _RS11675 BBR_RS11680: BBR_RS11680 - 23S rRNA methyltransferase, at 374,970 to 375,908 _RS11680 Position (kb) 374 375Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 373.258 kb on - strand, within BBR_RS11670at 373.286 kb on + strand, within BBR_RS11670at 373.286 kb on + strand, within BBR_RS11670at 373.293 kb on - strand, within BBR_RS11670at 373.332 kb on - strand, within BBR_RS11670at 373.344 kb on + strand, within BBR_RS11670at 373.344 kb on + strand, within BBR_RS11670at 373.354 kb on - strand, within BBR_RS11670at 373.402 kb on + strand, within BBR_RS11670at 373.408 kb on + strand, within BBR_RS11670at 373.408 kb on - strand, within BBR_RS11670at 373.417 kb on + strand, within BBR_RS11670at 373.417 kb on + strand, within BBR_RS11670at 373.417 kb on + strand, within BBR_RS11670at 373.417 kb on + strand, within BBR_RS11670at 373.424 kb on + strand, within BBR_RS11670at 373.425 kb on - strand, within BBR_RS11670at 373.465 kb on - strand, within BBR_RS11670at 373.469 kb on + strand, within BBR_RS11670at 373.484 kb on - strand, within BBR_RS11670at 373.510 kb on - strand, within BBR_RS11670at 373.512 kb on + strand, within BBR_RS11670at 373.516 kb on + strand, within BBR_RS11670at 373.532 kb on - strand, within BBR_RS11670at 373.539 kb on - strand, within BBR_RS11670at 373.543 kb on + strand, within BBR_RS11670at 373.555 kb on - strand, within BBR_RS11670at 373.560 kb on + strand, within BBR_RS11670at 373.568 kb on - strand, within BBR_RS11670at 373.570 kb on + strand, within BBR_RS11670at 373.580 kb on - strand, within BBR_RS11670at 373.599 kb on - strand, within BBR_RS11670at 373.601 kb on + strand, within BBR_RS11670at 373.615 kb on + strand, within BBR_RS11670at 373.648 kb on + strand, within BBR_RS11670at 373.666 kb on + strand, within BBR_RS11670at 373.700 kb on - strand, within BBR_RS11670at 373.705 kb on + strand, within BBR_RS11670at 373.712 kb on + strand, within BBR_RS11670at 373.728 kb on + strand, within BBR_RS11670at 373.728 kb on - strand, within BBR_RS11670at 373.728 kb on - strand, within BBR_RS11670at 373.733 kb on + strand, within BBR_RS11670at 373.735 kb on - strand, within BBR_RS11670at 373.736 kb on + strand, within BBR_RS11670at 373.746 kb on - strand, within BBR_RS11670at 373.777 kb on + strand, within BBR_RS11670at 373.811 kb on + strand, within BBR_RS11670at 373.811 kb on + strand, within BBR_RS11670at 373.836 kb on + strand, within BBR_RS11670at 373.844 kb on - strand, within BBR_RS11670at 373.849 kb on + strand, within BBR_RS11670at 373.859 kb on + strand, within BBR_RS11670at 373.859 kb on + strand, within BBR_RS11670at 373.860 kb on + strand, within BBR_RS11670at 373.860 kb on + strand, within BBR_RS11670at 373.860 kb on + strand, within BBR_RS11670at 373.867 kb on - strand, within BBR_RS11670at 373.868 kb on - strand, within BBR_RS11670at 373.868 kb on - strand, within BBR_RS11670at 373.868 kb on - strand, within BBR_RS11670at 373.880 kb on + strand, within BBR_RS11670at 373.880 kb on + strand, within BBR_RS11670at 373.880 kb on + strand, within BBR_RS11670at 373.881 kb on + strand, within BBR_RS11670at 373.904 kb on + strand, within BBR_RS11670at 373.917 kb on - strand, within BBR_RS11670at 373.917 kb on - strand, within BBR_RS11670at 373.944 kb on + strand, within BBR_RS11670at 373.971 kb on + strand, within BBR_RS11670at 373.971 kb on + strand, within BBR_RS11670at 373.971 kb on + strand, within BBR_RS11670at 373.992 kb on - strand, within BBR_RS11670at 374.005 kb on + strand, within BBR_RS11670at 374.036 kb on + strand, within BBR_RS11670at 374.043 kb on + strand, within BBR_RS11670at 374.044 kb on - strand, within BBR_RS11670at 374.079 kb on + strand, within BBR_RS11670at 374.116 kb on + strandat 374.126 kb on + strandat 374.126 kb on + strandat 374.162 kb on - strandat 374.162 kb on - strandat 374.182 kb on + strandat 374.220 kb on + strandat 374.220 kb on + strandat 374.229 kb on + strandat 374.229 kb on + strandat 374.230 kb on + strandat 374.233 kb on - strandat 374.242 kb on + strandat 374.242 kb on + strandat 374.243 kb on + strandat 374.283 kb on + strandat 374.288 kb on + strandat 374.290 kb on + strandat 374.290 kb on + strandat 374.325 kb on + strand, within BBR_RS11675at 374.436 kb on + strand, within BBR_RS11675at 374.509 kb on - strand, within BBR_RS11675at 374.621 kb on + strand, within BBR_RS11675at 374.884 kb on - strandat 374.902 kb on + strandat 374.910 kb on + strandat 374.910 kb on + strandat 374.927 kb on + strandat 374.945 kb on - strandat 374.945 kb on - strandat 374.985 kb on - strandat 375.037 kb on + strandat 375.045 kb on - strandat 375.052 kb on + strandat 375.073 kb on - strand, within BBR_RS11680at 375.073 kb on - strand, within BBR_RS11680at 375.084 kb on - strand, within BBR_RS11680at 375.093 kb on - strand, within BBR_RS11680at 375.110 kb on + strand, within BBR_RS11680at 375.118 kb on + strand, within BBR_RS11680at 375.126 kb on - strand, within BBR_RS11680at 375.128 kb on + strand, within BBR_RS11680at 375.135 kb on - strand, within BBR_RS11680at 375.161 kb on - strand, within BBR_RS11680at 375.170 kb on + strand, within BBR_RS11680at 375.170 kb on + strand, within BBR_RS11680at 375.170 kb on + strand, within BBR_RS11680at 375.170 kb on + strand, within BBR_RS11680at 375.170 kb on + strand, within BBR_RS11680at 375.170 kb on + strand, within BBR_RS11680at 375.178 kb on - strand, within BBR_RS11680at 375.178 kb on - strand, within BBR_RS11680at 375.178 kb on - strand, within BBR_RS11680at 375.178 kb on - strand, within BBR_RS11680at 375.180 kb on + strand, within BBR_RS11680at 375.180 kb on + strand, within BBR_RS11680at 375.183 kb on - strand, within BBR_RS11680at 375.188 kb on - strand, within BBR_RS11680at 375.188 kb on - strand, within BBR_RS11680at 375.188 kb on - strand, within BBR_RS11680at 375.291 kb on - strand, within BBR_RS11680at 375.299 kb on + strand, within BBR_RS11680at 375.299 kb on + strand, within BBR_RS11680at 375.302 kb on - strand, within BBR_RS11680at 375.307 kb on - strand, within BBR_RS11680at 375.322 kb on + strand, within BBR_RS11680at 375.363 kb on - strand, within BBR_RS11680at 375.365 kb on + strand, within BBR_RS11680at 375.369 kb on - strand, within BBR_RS11680at 375.369 kb on - strand, within BBR_RS11680at 375.369 kb on - strand, within BBR_RS11680at 375.378 kb on + strand, within BBR_RS11680at 375.378 kb on + strand, within BBR_RS11680at 375.378 kb on + strand, within BBR_RS11680at 375.386 kb on + strand, within BBR_RS11680at 375.394 kb on - strand, within BBR_RS11680at 375.394 kb on - strand, within BBR_RS11680at 375.415 kb on + strand, within BBR_RS11680at 375.471 kb on + strand, within BBR_RS11680at 375.488 kb on - strand, within BBR_RS11680at 375.488 kb on - strand, within BBR_RS11680at 375.498 kb on + strand, within BBR_RS11680at 375.498 kb on + strand, within BBR_RS11680at 375.499 kb on - strand, within BBR_RS11680at 375.517 kb on - strand, within BBR_RS11680at 375.526 kb on + strand, within BBR_RS11680at 375.559 kb on + strand, within BBR_RS11680at 375.567 kb on + strand, within BBR_RS11680at 375.575 kb on - strand, within BBR_RS11680at 375.579 kb on - strand, within BBR_RS11680at 375.579 kb on - strand, within BBR_RS11680at 375.585 kb on + strand, within BBR_RS11680at 375.609 kb on + strand, within BBR_RS11680at 375.655 kb on - strand, within BBR_RS11680at 375.671 kb on + strand, within BBR_RS11680at 375.683 kb on + strand, within BBR_RS11680at 375.685 kb on + strand, within BBR_RS11680at 375.686 kb on - strand, within BBR_RS11680at 375.713 kb on + strand, within BBR_RS11680at 375.723 kb on - strand, within BBR_RS11680at 375.723 kb on - strand, within BBR_RS11680at 375.726 kb on + strand, within BBR_RS11680at 375.734 kb on - strand, within BBR_RS11680at 375.736 kb on + strand, within BBR_RS11680at 375.736 kb on + strand, within BBR_RS11680at 375.738 kb on + strand, within BBR_RS11680at 375.746 kb on + strand, within BBR_RS11680at 375.759 kb on - strand, within BBR_RS11680at 375.760 kb on + strand, within BBR_RS11680at 375.760 kb on + strand, within BBR_RS11680at 375.760 kb on + strand, within BBR_RS11680at 375.772 kb on + strand, within BBR_RS11680at 375.778 kb on - strand, within BBR_RS11680at 375.781 kb on + strand, within BBR_RS11680at 375.789 kb on - strand, within BBR_RS11680at 375.804 kb on + strand, within BBR_RS11680at 375.826 kb on - strandat 375.835 kb on + strandat 375.836 kb on - strandat 375.877 kb on + strandat 375.877 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day2
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373,258 - BBR_RS11670 0.30 -2.2
373,286 + BBR_RS11670 0.32 -1.6
373,286 + BBR_RS11670 0.32 +1.1
373,293 - BBR_RS11670 0.33 +0.6
373,332 - BBR_RS11670 0.35 -2.4
373,344 + BBR_RS11670 0.36 -1.1
373,344 + BBR_RS11670 0.36 +0.7
373,354 - BBR_RS11670 0.37 +0.6
373,402 + BBR_RS11670 0.40 -2.2
373,408 + BBR_RS11670 0.41 +1.5
373,408 - BBR_RS11670 0.41 -2.6
373,417 + BBR_RS11670 0.41 +1.1
373,417 + BBR_RS11670 0.41 -3.0
373,417 + BBR_RS11670 0.41 -2.4
373,417 + BBR_RS11670 0.41 -2.3
373,424 + BBR_RS11670 0.42 -2.0
373,425 - BBR_RS11670 0.42 +0.2
373,465 - BBR_RS11670 0.45 +2.7
373,469 + BBR_RS11670 0.45 +0.3
373,484 - BBR_RS11670 0.46 +0.8
373,510 - BBR_RS11670 0.48 +1.1
373,512 + BBR_RS11670 0.48 -1.6
373,516 + BBR_RS11670 0.48 -2.4
373,532 - BBR_RS11670 0.49 -2.5
373,539 - BBR_RS11670 0.50 +0.8
373,543 + BBR_RS11670 0.50 +2.3
373,555 - BBR_RS11670 0.51 -1.3
373,560 + BBR_RS11670 0.51 -1.1
373,568 - BBR_RS11670 0.52 -2.1
373,570 + BBR_RS11670 0.52 +1.1
373,580 - BBR_RS11670 0.53 -1.5
373,599 - BBR_RS11670 0.54 +0.3
373,601 + BBR_RS11670 0.54 -2.8
373,615 + BBR_RS11670 0.55 -1.3
373,648 + BBR_RS11670 0.57 +1.0
373,666 + BBR_RS11670 0.59 +1.3
373,700 - BBR_RS11670 0.61 -3.2
373,705 + BBR_RS11670 0.61 +1.2
373,712 + BBR_RS11670 0.62 -1.5
373,728 + BBR_RS11670 0.63 +0.8
373,728 - BBR_RS11670 0.63 +0.9
373,728 - BBR_RS11670 0.63 -3.3
373,733 + BBR_RS11670 0.63 +2.3
373,735 - BBR_RS11670 0.64 +0.6
373,736 + BBR_RS11670 0.64 -3.3
373,746 - BBR_RS11670 0.64 -2.5
373,777 + BBR_RS11670 0.66 +1.3
373,811 + BBR_RS11670 0.69 -1.9
373,811 + BBR_RS11670 0.69 +0.9
373,836 + BBR_RS11670 0.71 -0.4
373,844 - BBR_RS11670 0.71 +0.5
373,849 + BBR_RS11670 0.71 +1.3
373,859 + BBR_RS11670 0.72 +0.8
373,859 + BBR_RS11670 0.72 -0.9
373,860 + BBR_RS11670 0.72 +2.5
373,860 + BBR_RS11670 0.72 +0.8
373,860 + BBR_RS11670 0.72 +0.9
373,867 - BBR_RS11670 0.73 -2.2
373,868 - BBR_RS11670 0.73 -0.4
373,868 - BBR_RS11670 0.73 +1.5
373,868 - BBR_RS11670 0.73 -0.1
373,880 + BBR_RS11670 0.74 -1.2
373,880 + BBR_RS11670 0.74 +1.7
373,880 + BBR_RS11670 0.74 +0.5
373,881 + BBR_RS11670 0.74 +3.4
373,904 + BBR_RS11670 0.75 +1.3
373,917 - BBR_RS11670 0.76 -3.6
373,917 - BBR_RS11670 0.76 +0.2
373,944 + BBR_RS11670 0.78 +1.1
373,971 + BBR_RS11670 0.80 +1.2
373,971 + BBR_RS11670 0.80 -3.4
373,971 + BBR_RS11670 0.80 -3.2
373,992 - BBR_RS11670 0.82 -1.0
374,005 + BBR_RS11670 0.82 -3.7
374,036 + BBR_RS11670 0.85 +1.6
374,043 + BBR_RS11670 0.85 +1.4
374,044 - BBR_RS11670 0.85 +1.7
374,079 + BBR_RS11670 0.88 -2.0
374,116 + -2.1
374,126 + +0.9
374,126 + +2.4
374,162 - -2.3
374,162 - -4.2
374,182 + -2.2
374,220 + +1.0
374,220 + +2.3
374,229 + +1.1
374,229 + +1.5
374,230 + +0.7
374,233 - +0.0
374,242 + +0.7
374,242 + +0.9
374,243 + -1.7
374,283 + -1.8
374,288 + +1.7
374,290 + -2.5
374,290 + -1.5
374,325 + BBR_RS11675 0.12 -0.6
374,436 + BBR_RS11675 0.29 -0.3
374,509 - BBR_RS11675 0.41 +0.8
374,621 + BBR_RS11675 0.59 +0.1
374,884 - +1.5
374,902 + +2.8
374,910 + +0.6
374,910 + -0.7
374,927 + -1.7
374,945 - +2.3
374,945 - +0.6
374,985 - -1.5
375,037 + -2.0
375,045 - -2.6
375,052 + +0.2
375,073 - BBR_RS11680 0.11 +1.6
375,073 - BBR_RS11680 0.11 +0.0
375,084 - BBR_RS11680 0.12 +2.0
375,093 - BBR_RS11680 0.13 +1.2
375,110 + BBR_RS11680 0.15 +2.5
375,118 + BBR_RS11680 0.16 -2.8
375,126 - BBR_RS11680 0.17 -1.9
375,128 + BBR_RS11680 0.17 -3.0
375,135 - BBR_RS11680 0.18 +0.8
375,161 - BBR_RS11680 0.20 -1.0
375,170 + BBR_RS11680 0.21 -2.2
375,170 + BBR_RS11680 0.21 -2.0
375,170 + BBR_RS11680 0.21 -1.4
375,170 + BBR_RS11680 0.21 +0.0
375,170 + BBR_RS11680 0.21 -1.6
375,170 + BBR_RS11680 0.21 +1.8
375,178 - BBR_RS11680 0.22 -0.8
375,178 - BBR_RS11680 0.22 -1.1
375,178 - BBR_RS11680 0.22 +1.2
375,178 - BBR_RS11680 0.22 +3.1
375,180 + BBR_RS11680 0.22 -0.8
375,180 + BBR_RS11680 0.22 -1.7
375,183 - BBR_RS11680 0.23 -2.0
375,188 - BBR_RS11680 0.23 -1.9
375,188 - BBR_RS11680 0.23 -1.3
375,188 - BBR_RS11680 0.23 +3.5
375,291 - BBR_RS11680 0.34 -2.3
375,299 + BBR_RS11680 0.35 +1.2
375,299 + BBR_RS11680 0.35 +0.7
375,302 - BBR_RS11680 0.35 -0.8
375,307 - BBR_RS11680 0.36 -2.3
375,322 + BBR_RS11680 0.37 -0.3
375,363 - BBR_RS11680 0.42 +4.8
375,365 + BBR_RS11680 0.42 +3.1
375,369 - BBR_RS11680 0.42 -2.0
375,369 - BBR_RS11680 0.42 +1.0
375,369 - BBR_RS11680 0.42 -2.6
375,378 + BBR_RS11680 0.43 +0.4
375,378 + BBR_RS11680 0.43 -1.4
375,378 + BBR_RS11680 0.43 -2.4
375,386 + BBR_RS11680 0.44 -0.5
375,394 - BBR_RS11680 0.45 -1.7
375,394 - BBR_RS11680 0.45 -0.5
375,415 + BBR_RS11680 0.47 +1.3
375,471 + BBR_RS11680 0.53 +0.4
375,488 - BBR_RS11680 0.55 +0.8
375,488 - BBR_RS11680 0.55 +2.0
375,498 + BBR_RS11680 0.56 +2.4
375,498 + BBR_RS11680 0.56 -2.3
375,499 - BBR_RS11680 0.56 -0.1
375,517 - BBR_RS11680 0.58 +1.4
375,526 + BBR_RS11680 0.59 -1.3
375,559 + BBR_RS11680 0.63 -2.4
375,567 + BBR_RS11680 0.64 -1.3
375,575 - BBR_RS11680 0.64 +0.7
375,579 - BBR_RS11680 0.65 +0.5
375,579 - BBR_RS11680 0.65 -1.5
375,585 + BBR_RS11680 0.65 -2.3
375,609 + BBR_RS11680 0.68 -1.1
375,655 - BBR_RS11680 0.73 -3.3
375,671 + BBR_RS11680 0.75 -1.2
375,683 + BBR_RS11680 0.76 -1.3
375,685 + BBR_RS11680 0.76 +1.5
375,686 - BBR_RS11680 0.76 -0.0
375,713 + BBR_RS11680 0.79 -0.5
375,723 - BBR_RS11680 0.80 -0.9
375,723 - BBR_RS11680 0.80 -0.9
375,726 + BBR_RS11680 0.81 -0.6
375,734 - BBR_RS11680 0.81 +1.2
375,736 + BBR_RS11680 0.82 -0.4
375,736 + BBR_RS11680 0.82 +2.5
375,738 + BBR_RS11680 0.82 +0.6
375,746 + BBR_RS11680 0.83 -1.0
375,759 - BBR_RS11680 0.84 +0.5
375,760 + BBR_RS11680 0.84 -1.1
375,760 + BBR_RS11680 0.84 -2.0
375,760 + BBR_RS11680 0.84 +2.0
375,772 + BBR_RS11680 0.85 -0.4
375,778 - BBR_RS11680 0.86 +1.4
375,781 + BBR_RS11680 0.86 -2.3
375,789 - BBR_RS11680 0.87 -1.3
375,804 + BBR_RS11680 0.89 +0.1
375,826 - -0.9
375,835 + -1.9
375,836 - +0.6
375,877 + -1.8
375,877 + -1.8

Or see this region's nucleotide sequence