Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2873

Experiment: Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
3,592,579	+				+0.2
3,592,613	+				-2.4
3,592,631	+				-1.9
3,592,712	-				-1.8
3,592,850	+		BT2872	0.23	-3.7
3,592,961	-		BT2872	0.35	+1.6
3,592,963	+		BT2872	0.35	-1.8
3,592,964	-		BT2872	0.35	-2.0
3,592,964	-		BT2872	0.35	+0.2
3,592,964	-		BT2872	0.35	-3.4
3,592,981	+		BT2872	0.37	-0.2
3,593,014	-		BT2872	0.41	+0.3
3,593,062	-		BT2872	0.46	-2.5
3,593,112	-		BT2872	0.51	+0.8
3,593,119	+				-1.2
3,593,132	+		BT2872	0.54	-0.7
3,593,132	+		BT2872	0.54	-1.4
3,593,142	+		BT2872	0.55	-0.6
3,593,142	+		BT2872	0.55	-0.6
3,593,153	+		BT2872	0.56	-1.2
3,593,199	-		BT2872	0.61	-0.2
3,593,238	-		BT2872	0.65	-2.2
3,593,240	-		BT2872	0.65	-0.7
3,593,241	+		BT2872	0.65	-1.2
3,593,250	-		BT2872	0.66	-2.2
3,593,255	+		BT2872	0.67	+0.8
3,593,255	+		BT2872	0.67	-0.9
3,593,255	+		BT2872	0.67	-2.0
3,593,255	+		BT2872	0.67	-0.8
3,593,256	-		BT2872	0.67	-2.0
3,593,256	-		BT2872	0.67	-1.7
3,593,256	-		BT2872	0.67	-2.8
3,593,323	-		BT2872	0.74	-0.3
3,593,416	-		BT2872	0.84	-3.4
3,593,423	+		BT2872	0.85	-2.1
3,593,437	-		BT2872	0.86	-0.9
3,593,439	+		BT2872	0.87	-3.2
3,593,440	-		BT2872	0.87	-0.6
3,593,446	+		BT2872	0.87	-0.8
3,593,452	+		BT2872	0.88	-0.2
3,593,495	-				-2.2
3,593,495	-				-1.2
3,593,533	+				-0.2
3,593,546	+				-0.8
3,593,546	+				+2.4
3,593,547	-				-1.0
3,593,596	+				+0.8
3,593,596	+				-1.6
3,593,611	-				-0.9
3,593,642	+				+0.1
3,593,643	-				-1.2
3,593,650	-				-0.2
3,593,660	+				+1.4
3,593,661	-				+0.0
3,593,671	-		BT2873	0.10	-2.2
3,593,774	+		BT2873	0.21	+0.2
3,593,779	+		BT2873	0.22	-0.2
3,593,779	+		BT2873	0.22	-0.8
3,593,780	-		BT2873	0.22	-0.5
3,593,780	-		BT2873	0.22	-1.7
3,593,780	-		BT2873	0.22	-1.8
3,593,784	+		BT2873	0.22	+1.8
3,593,784	+		BT2873	0.22	-1.2
3,593,784	+		BT2873	0.22	-1.8
3,593,784	+		BT2873	0.22	+1.8
3,593,846	+		BT2873	0.29	-1.1
3,593,846	+		BT2873	0.29	-1.2
3,593,847	-		BT2873	0.29	-1.2
3,593,872	-		BT2873	0.32	-2.1
3,593,872	-		BT2873	0.32	-2.5
3,593,882	+		BT2873	0.33	-3.5
3,593,952	-		BT2873	0.41	+0.4
3,593,952	-		BT2873	0.41	+1.1
3,593,952	-		BT2873	0.41	-4.1
3,594,036	+		BT2873	0.50	-1.8
3,594,039	+		BT2873	0.50	-1.5
3,594,054	+		BT2873	0.52	-2.2
3,594,054	+		BT2873	0.52	-1.2
3,594,054	+		BT2873	0.52	-1.4
3,594,147	-		BT2873	0.62	-1.5
3,594,187	+		BT2873	0.66	-1.3
3,594,187	+		BT2873	0.66	-1.5
3,594,187	+		BT2873	0.66	-2.0
3,594,187	+		BT2873	0.66	-2.2
3,594,191	+		BT2873	0.66	-0.2
3,594,206	+		BT2873	0.68	-2.4
3,594,217	+		BT2873	0.69	+0.8
3,594,271	-		BT2873	0.75	-1.9
3,594,272	+		BT2873	0.75	-1.7
3,594,272	+		BT2873	0.75	-3.0
3,594,272	+		BT2873	0.75	-0.5
3,594,272	+		BT2873	0.75	-1.1
3,594,273	-		BT2873	0.75	-2.1
3,594,274	+		BT2873	0.75	-0.2
3,594,276	+		BT2873	0.75	-1.7
3,594,276	+		BT2873	0.75	-2.5
3,594,276	+		BT2873	0.75	-1.7
3,594,276	+		BT2873	0.75	-0.7
3,594,277	-		BT2873	0.75	-1.1
3,594,331	+		BT2873	0.81	-3.0
3,594,332	-		BT2873	0.81	-1.6
3,594,335	-		BT2873	0.82	-1.2
3,594,340	+		BT2873	0.82	-1.2
3,594,380	-		BT2873	0.87	-1.2
3,594,394	+		BT2873	0.88	-0.4
3,594,395	-		BT2873	0.88	-0.2
3,594,424	+				+0.8
3,594,431	+				-1.1
3,594,432	-				-1.8
3,594,441	+				-2.5
3,594,441	+				-2.0
3,594,442	-				-1.8
3,594,442	-				-1.8
3,594,468	+				-1.4
3,594,469	-				-1.2
3,594,478	+				-1.5
3,594,510	+				+0.0
3,594,511	-				+0.8
3,594,533	-				-0.2
3,594,617	+		BT2874	0.13	-0.4
3,594,618	-		BT2874	0.13	-0.2
3,594,632	+		BT2874	0.15	-1.3
3,594,633	-		BT2874	0.15	+0.4
3,594,633	-		BT2874	0.15	-1.4
3,594,633	-		BT2874	0.15	-5.0
3,594,633	-		BT2874	0.15	-0.2
3,594,634	+		BT2874	0.15	-1.5
3,594,635	-		BT2874	0.15	-1.2
3,594,637	-		BT2874	0.15	-1.2
3,594,662	+		BT2874	0.18	-0.5
3,594,720	+		BT2874	0.26	-0.2
3,594,721	-		BT2874	0.26	-0.2
3,594,721	-		BT2874	0.26	-1.8
3,594,721	-		BT2874	0.26	-2.7
3,594,724	-		BT2874	0.26	-0.4
3,594,803	+		BT2874	0.36	-2.2
3,594,809	+		BT2874	0.37	-1.3
3,594,822	+		BT2874	0.38	-0.7
3,594,822	+		BT2874	0.38	-1.7
3,594,823	-		BT2874	0.38	-0.3
3,594,901	+		BT2874	0.48	-0.2
3,594,901	+		BT2874	0.48	-0.4
3,594,901	+		BT2874	0.48	-3.0
3,594,902	-		BT2874	0.48	+0.8
3,595,010	-		BT2874	0.62	-2.2
3,595,010	-		BT2874	0.62	-2.5
3,595,020	+		BT2874	0.63	-2.2
3,595,027	+		BT2874	0.64	-0.5
3,595,096	-		BT2874	0.73	-1.8
3,595,096	-		BT2874	0.73	-0.2
3,595,099	+		BT2874	0.73	-1.2
3,595,105	+		BT2874	0.74	-2.3
3,595,226	+		BT2874	0.89	-0.5
3,595,240	+				-0.9
3,595,240	+				-0.7
3,595,241	-				-1.7
3,595,244	+				-1.8
3,595,307	+				-1.8
3,595,316	+				-4.2
3,595,317	-				-2.3
3,595,329	+				-0.6
3,595,348	+				+1.4
3,595,369	+		BT2875	0.10	-2.5
3,595,424	-		BT2875	0.20	-0.7
3,595,456	-		BT2875	0.26	-1.2
3,595,464	+		BT2875	0.28	-1.2