Experiment: Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0785 and BT0786 are separated by 390 nucleotides BT0786 and BT0787 are separated by 102 nucleotides BT0787 and BT0788 are separated by 29 nucleotides
BT0785: BT0785 - glutamine synthetase I (NCBI ptt file), at 973,619 to 975,121
BT0785
BT0786: BT0786 - putative integral membrane protein (NCBI ptt file), at 975,512 to 976,234
BT0786
BT0787: BT0787 - succinyl-CoA synthetase alpha chain (NCBI ptt file), at 976,337 to 977,197
BT0787
BT0788: BT0788 - succinyl-CoA synthetase beta chain (NCBI ptt file), at 977,227 to 978,357
BT0788
Position (kb) 975
976
977 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 974.537 kb on - strand, within BT0785 at 974.537 kb on - strand, within BT0785 at 974.537 kb on - strand, within BT0785 at 974.650 kb on - strand, within BT0785 at 974.683 kb on + strand, within BT0785 at 974.683 kb on + strand, within BT0785 at 974.859 kb on - strand, within BT0785 at 975.097 kb on - strand at 975.127 kb on - strand at 975.153 kb on - strand at 975.230 kb on + strand at 975.284 kb on + strand at 975.342 kb on - strand at 975.462 kb on - strand at 975.511 kb on + strand at 975.522 kb on + strand at 975.661 kb on - strand, within BT0786 at 975.669 kb on - strand, within BT0786 at 975.773 kb on - strand, within BT0786 at 975.853 kb on - strand, within BT0786 at 975.856 kb on - strand, within BT0786 at 975.872 kb on - strand, within BT0786 at 975.875 kb on + strand, within BT0786 at 975.907 kb on + strand, within BT0786 at 975.908 kb on - strand, within BT0786 at 975.932 kb on - strand, within BT0786 at 975.969 kb on - strand, within BT0786 at 976.068 kb on - strand, within BT0786 at 976.145 kb on - strand, within BT0786 at 976.200 kb on + strand at 976.200 kb on + strand at 976.232 kb on + strand at 976.252 kb on - strand at 976.274 kb on - strand at 976.277 kb on + strand at 976.277 kb on + strand at 976.278 kb on - strand at 976.354 kb on + strand at 976.354 kb on + strand at 976.355 kb on - strand at 976.400 kb on + strand at 976.409 kb on + strand at 976.445 kb on - strand, within BT0787 at 976.508 kb on + strand, within BT0787 at 976.508 kb on + strand, within BT0787 at 976.516 kb on + strand, within BT0787 at 976.517 kb on - strand, within BT0787 at 976.535 kb on - strand, within BT0787 at 976.679 kb on - strand, within BT0787 at 976.704 kb on - strand, within BT0787 at 976.710 kb on + strand, within BT0787 at 976.711 kb on - strand, within BT0787 at 976.711 kb on - strand, within BT0787 at 976.713 kb on - strand, within BT0787 at 976.715 kb on + strand, within BT0787 at 976.716 kb on - strand, within BT0787 at 976.722 kb on + strand, within BT0787 at 976.798 kb on + strand, within BT0787 at 976.799 kb on - strand, within BT0787 at 976.799 kb on - strand, within BT0787 at 976.957 kb on + strand, within BT0787 at 976.958 kb on - strand, within BT0787 at 977.033 kb on - strand, within BT0787 at 977.107 kb on - strand, within BT0787 at 977.180 kb on - strand at 977.180 kb on - strand at 977.190 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol% remove 974,537 - BT0785 0.61 +1.2 974,537 - BT0785 0.61 +1.2 974,537 - BT0785 0.61 -1.4 974,650 - BT0785 0.69 -0.8 974,683 + BT0785 0.71 +0.2 974,683 + BT0785 0.71 -1.1 974,859 - BT0785 0.83 +0.2 975,097 - -0.8 975,127 - -0.8 975,153 - -2.0 975,230 + +0.2 975,284 + -0.6 975,342 - -1.4 975,462 - -0.8 975,511 + -0.2 975,522 + +0.2 975,661 - BT0786 0.21 -1.4 975,669 - BT0786 0.22 -1.7 975,773 - BT0786 0.36 -0.8 975,853 - BT0786 0.47 +0.2 975,856 - BT0786 0.48 -1.8 975,872 - BT0786 0.50 +0.2 975,875 + BT0786 0.50 -1.4 975,907 + BT0786 0.55 +0.7 975,908 - BT0786 0.55 -1.0 975,932 - BT0786 0.58 -0.2 975,969 - BT0786 0.63 -1.2 976,068 - BT0786 0.77 +0.2 976,145 - BT0786 0.88 +0.2 976,200 + -0.2 976,200 + +1.2 976,232 + -1.4 976,252 - -0.6 976,274 - +0.2 976,277 + -1.7 976,277 + +1.4 976,278 - -0.8 976,354 + +1.2 976,354 + +0.8 976,355 - +1.2 976,400 + -3.0 976,409 + -0.8 976,445 - BT0787 0.13 -0.5 976,508 + BT0787 0.20 -0.8 976,508 + BT0787 0.20 -1.0 976,516 + BT0787 0.21 -4.9 976,517 - BT0787 0.21 -0.4 976,535 - BT0787 0.23 -1.8 976,679 - BT0787 0.40 -2.2 976,704 - BT0787 0.43 -1.8 976,710 + BT0787 0.43 -1.8 976,711 - BT0787 0.43 +0.7 976,711 - BT0787 0.43 -0.6 976,713 - BT0787 0.44 +1.2 976,715 + BT0787 0.44 -1.7 976,716 - BT0787 0.44 -2.2 976,722 + BT0787 0.45 +1.8 976,798 + BT0787 0.54 -0.8 976,799 - BT0787 0.54 -3.1 976,799 - BT0787 0.54 +1.2 976,957 + BT0787 0.72 -2.2 976,958 - BT0787 0.72 +0.2 977,033 - BT0787 0.81 +0.2 977,107 - BT0787 0.89 -1.5 977,180 - -1.8 977,180 - +1.8 977,190 - -1.3
Or see this region's nucleotide sequence