Experiment: MoLS4 with L-Glycine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0060 and DVUA0061 overlap by 4 nucleotides DVUA0061 and DVUA0062 overlap by 4 nucleotides
DVUA0060: DVUA0060 - membrane protein, putative (TIGR), at 74,453 to 75,838
DVUA0060
DVUA0061: DVUA0061 - membrane protein, putative (TIGR), at 75,835 to 77,187
DVUA0061
DVUA0062: DVUA0062 - conserved domain protein (TIGR), at 77,184 to 78,479
DVUA0062
Position (kb) 75
76
77
78 Strain fitness (log2 ratio) -2
-1
0
1
2 at 74.877 kb on - strand, within DVUA0060 at 74.898 kb on + strand, within DVUA0060 at 74.917 kb on + strand, within DVUA0060 at 74.934 kb on - strand, within DVUA0060 at 74.980 kb on - strand, within DVUA0060 at 75.017 kb on - strand, within DVUA0060 at 75.195 kb on - strand, within DVUA0060 at 75.217 kb on + strand, within DVUA0060 at 75.217 kb on + strand, within DVUA0060 at 75.225 kb on - strand, within DVUA0060 at 75.225 kb on - strand, within DVUA0060 at 75.225 kb on - strand, within DVUA0060 at 75.263 kb on + strand, within DVUA0060 at 75.301 kb on + strand, within DVUA0060 at 75.325 kb on - strand, within DVUA0060 at 75.504 kb on - strand, within DVUA0060 at 75.606 kb on + strand, within DVUA0060 at 75.630 kb on + strand, within DVUA0060 at 75.700 kb on + strand at 75.764 kb on + strand at 75.840 kb on - strand at 75.841 kb on - strand at 75.846 kb on + strand at 75.847 kb on + strand at 75.918 kb on + strand at 75.954 kb on + strand at 75.962 kb on - strand at 76.018 kb on - strand, within DVUA0061 at 76.059 kb on - strand, within DVUA0061 at 76.115 kb on + strand, within DVUA0061 at 76.275 kb on - strand, within DVUA0061 at 76.295 kb on + strand, within DVUA0061 at 76.318 kb on - strand, within DVUA0061 at 76.322 kb on + strand, within DVUA0061 at 76.382 kb on - strand, within DVUA0061 at 76.423 kb on - strand, within DVUA0061 at 76.458 kb on - strand, within DVUA0061 at 76.554 kb on + strand, within DVUA0061 at 76.597 kb on - strand, within DVUA0061 at 76.607 kb on - strand, within DVUA0061 at 76.637 kb on + strand, within DVUA0061 at 76.637 kb on + strand, within DVUA0061 at 76.645 kb on - strand, within DVUA0061 at 76.661 kb on + strand, within DVUA0061 at 76.661 kb on + strand, within DVUA0061 at 76.661 kb on + strand, within DVUA0061 at 76.732 kb on + strand, within DVUA0061 at 76.740 kb on - strand, within DVUA0061 at 76.740 kb on - strand, within DVUA0061 at 76.740 kb on - strand, within DVUA0061 at 76.745 kb on - strand, within DVUA0061 at 76.844 kb on + strand, within DVUA0061 at 76.864 kb on - strand, within DVUA0061 at 76.887 kb on - strand, within DVUA0061 at 76.887 kb on - strand, within DVUA0061 at 76.887 kb on - strand, within DVUA0061 at 76.898 kb on + strand, within DVUA0061 at 76.898 kb on + strand, within DVUA0061 at 76.906 kb on - strand, within DVUA0061 at 76.906 kb on - strand, within DVUA0061 at 76.916 kb on - strand, within DVUA0061 at 76.932 kb on - strand, within DVUA0061 at 77.088 kb on - strand at 77.286 kb on - strand at 77.326 kb on + strand, within DVUA0062 at 77.326 kb on + strand, within DVUA0062 at 77.402 kb on - strand, within DVUA0062 at 77.409 kb on - strand, within DVUA0062 at 77.424 kb on - strand, within DVUA0062 at 77.494 kb on - strand, within DVUA0062 at 77.576 kb on + strand, within DVUA0062 at 77.576 kb on + strand, within DVUA0062 at 77.639 kb on + strand, within DVUA0062 at 77.752 kb on - strand, within DVUA0062 at 77.772 kb on + strand, within DVUA0062 at 77.813 kb on - strand, within DVUA0062 at 77.850 kb on - strand, within DVUA0062 at 77.884 kb on - strand, within DVUA0062 at 77.922 kb on + strand, within DVUA0062 at 78.033 kb on + strand, within DVUA0062 at 78.092 kb on - strand, within DVUA0062 at 78.097 kb on - strand, within DVUA0062
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine as nutrient 10mM remove 74,877 - DVUA0060 0.31 -0.1 74,898 + DVUA0060 0.32 +0.2 74,917 + DVUA0060 0.33 -1.5 74,934 - DVUA0060 0.35 -1.4 74,980 - DVUA0060 0.38 +1.9 75,017 - DVUA0060 0.41 +1.5 75,195 - DVUA0060 0.54 -0.1 75,217 + DVUA0060 0.55 +0.4 75,217 + DVUA0060 0.55 -0.1 75,225 - DVUA0060 0.56 +1.1 75,225 - DVUA0060 0.56 -0.4 75,225 - DVUA0060 0.56 +0.0 75,263 + DVUA0060 0.58 +0.0 75,301 + DVUA0060 0.61 +0.0 75,325 - DVUA0060 0.63 +0.4 75,504 - DVUA0060 0.76 -0.3 75,606 + DVUA0060 0.83 -0.8 75,630 + DVUA0060 0.85 -0.9 75,700 + -0.5 75,764 + -0.7 75,840 - -0.0 75,841 - -0.2 75,846 + -0.0 75,847 + -0.8 75,918 + -1.0 75,954 + +0.6 75,962 - -0.2 76,018 - DVUA0061 0.14 -0.3 76,059 - DVUA0061 0.17 -0.1 76,115 + DVUA0061 0.21 -0.6 76,275 - DVUA0061 0.33 -1.1 76,295 + DVUA0061 0.34 -0.2 76,318 - DVUA0061 0.36 -1.0 76,322 + DVUA0061 0.36 +0.0 76,382 - DVUA0061 0.40 +0.3 76,423 - DVUA0061 0.43 -1.1 76,458 - DVUA0061 0.46 -1.5 76,554 + DVUA0061 0.53 -1.5 76,597 - DVUA0061 0.56 +0.7 76,607 - DVUA0061 0.57 +0.0 76,637 + DVUA0061 0.59 +0.7 76,637 + DVUA0061 0.59 -1.1 76,645 - DVUA0061 0.60 +0.2 76,661 + DVUA0061 0.61 -0.8 76,661 + DVUA0061 0.61 +1.3 76,661 + DVUA0061 0.61 +0.7 76,732 + DVUA0061 0.66 -0.9 76,740 - DVUA0061 0.67 -0.2 76,740 - DVUA0061 0.67 -0.2 76,740 - DVUA0061 0.67 -1.3 76,745 - DVUA0061 0.67 -1.0 76,844 + DVUA0061 0.75 +0.2 76,864 - DVUA0061 0.76 -1.7 76,887 - DVUA0061 0.78 -0.3 76,887 - DVUA0061 0.78 -0.1 76,887 - DVUA0061 0.78 -0.4 76,898 + DVUA0061 0.79 -0.5 76,898 + DVUA0061 0.79 -0.6 76,906 - DVUA0061 0.79 -1.0 76,906 - DVUA0061 0.79 -2.2 76,916 - DVUA0061 0.80 -1.4 76,932 - DVUA0061 0.81 -0.0 77,088 - -1.2 77,286 - +0.6 77,326 + DVUA0062 0.11 -1.0 77,326 + DVUA0062 0.11 -1.3 77,402 - DVUA0062 0.17 +0.1 77,409 - DVUA0062 0.17 +0.4 77,424 - DVUA0062 0.19 -0.7 77,494 - DVUA0062 0.24 -1.1 77,576 + DVUA0062 0.30 +0.1 77,576 + DVUA0062 0.30 -0.1 77,639 + DVUA0062 0.35 -0.3 77,752 - DVUA0062 0.44 +0.7 77,772 + DVUA0062 0.45 +0.4 77,813 - DVUA0062 0.49 -2.2 77,850 - DVUA0062 0.51 -0.3 77,884 - DVUA0062 0.54 +0.7 77,922 + DVUA0062 0.57 -0.0 78,033 + DVUA0062 0.66 -2.3 78,092 - DVUA0062 0.70 +0.4 78,097 - DVUA0062 0.70 -0.1
Or see this region's nucleotide sequence