Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0088

Experiment: MoLS4 with L-Glycine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0087 and DVU0088 overlap by 4 nucleotidesDVU0088 and DVU0089 are separated by 55 nucleotides DVU0087: DVU0087 - conserved domain protein (TIGR), at 111,902 to 112,396 DVU0087 DVU0088: DVU0088 - Sodium/pantothenate symporter (TIGR), at 112,393 to 113,880 DVU0088 DVU0089: DVU0089 - conserved hypothetical protein (TIGR), at 113,936 to 114,739 DVU0089 Position (kb) 112 113 114Strain fitness (log2 ratio) -2 -1 0 1at 111.502 kb on + strandat 111.508 kb on - strandat 111.508 kb on - strandat 111.510 kb on - strandat 111.513 kb on + strandat 111.632 kb on + strandat 111.687 kb on + strandat 111.729 kb on + strandat 111.803 kb on + strandat 111.819 kb on + strandat 111.860 kb on + strandat 111.938 kb on - strandat 111.952 kb on - strand, within DVU0087at 111.965 kb on + strand, within DVU0087at 112.013 kb on + strand, within DVU0087at 112.146 kb on - strand, within DVU0087at 112.241 kb on - strand, within DVU0087at 112.356 kb on + strandat 112.404 kb on + strandat 112.412 kb on - strandat 112.451 kb on + strandat 112.513 kb on + strandat 112.515 kb on + strandat 112.515 kb on + strandat 112.744 kb on - strand, within DVU0088at 112.857 kb on + strand, within DVU0088at 112.964 kb on + strand, within DVU0088at 113.046 kb on + strand, within DVU0088at 113.058 kb on + strand, within DVU0088at 113.162 kb on - strand, within DVU0088at 113.177 kb on - strand, within DVU0088at 113.177 kb on - strand, within DVU0088at 113.285 kb on + strand, within DVU0088at 113.345 kb on + strand, within DVU0088at 113.353 kb on - strand, within DVU0088at 113.490 kb on + strand, within DVU0088at 113.490 kb on - strand, within DVU0088at 113.490 kb on - strand, within DVU0088at 113.492 kb on + strand, within DVU0088at 113.500 kb on - strand, within DVU0088at 113.500 kb on - strand, within DVU0088at 113.500 kb on - strand, within DVU0088at 113.590 kb on - strand, within DVU0088at 113.602 kb on + strand, within DVU0088at 113.796 kb on - strandat 113.837 kb on - strandat 113.867 kb on - strandat 113.867 kb on - strandat 113.910 kb on + strandat 113.922 kb on + strandat 113.941 kb on - strandat 113.954 kb on + strandat 113.955 kb on + strandat 113.963 kb on - strandat 114.092 kb on + strand, within DVU0089at 114.304 kb on + strand, within DVU0089at 114.351 kb on - strand, within DVU0089at 114.405 kb on - strand, within DVU0089at 114.441 kb on + strand, within DVU0089at 114.464 kb on + strand, within DVU0089at 114.508 kb on + strand, within DVU0089at 114.521 kb on - strand, within DVU0089at 114.600 kb on + strand, within DVU0089at 114.600 kb on + strand, within DVU0089at 114.600 kb on + strand, within DVU0089at 114.608 kb on - strand, within DVU0089at 114.720 kb on + strandat 114.848 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine as nutrient 10mM
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111,502 + +1.2
111,508 - -0.0
111,508 - -1.1
111,510 - +0.0
111,513 + -1.4
111,632 + +0.1
111,687 + -0.8
111,729 + +0.3
111,803 + +0.0
111,819 + +0.6
111,860 + -0.7
111,938 - -0.0
111,952 - DVU0087 0.10 -0.4
111,965 + DVU0087 0.13 -0.1
112,013 + DVU0087 0.22 -0.7
112,146 - DVU0087 0.49 -1.0
112,241 - DVU0087 0.68 -0.2
112,356 + +0.2
112,404 + -0.1
112,412 - -0.6
112,451 + -0.4
112,513 + +1.1
112,515 + -0.5
112,515 + +0.3
112,744 - DVU0088 0.24 -1.7
112,857 + DVU0088 0.31 -0.3
112,964 + DVU0088 0.38 -0.1
113,046 + DVU0088 0.44 -1.2
113,058 + DVU0088 0.45 -0.6
113,162 - DVU0088 0.52 +0.2
113,177 - DVU0088 0.53 +0.6
113,177 - DVU0088 0.53 +0.2
113,285 + DVU0088 0.60 +0.7
113,345 + DVU0088 0.64 -0.8
113,353 - DVU0088 0.65 -0.7
113,490 + DVU0088 0.74 -0.2
113,490 - DVU0088 0.74 +0.1
113,490 - DVU0088 0.74 +0.3
113,492 + DVU0088 0.74 +0.0
113,500 - DVU0088 0.74 -0.4
113,500 - DVU0088 0.74 -0.7
113,500 - DVU0088 0.74 -0.5
113,590 - DVU0088 0.80 -0.3
113,602 + DVU0088 0.81 -0.2
113,796 - -0.1
113,837 - -1.8
113,867 - +0.1
113,867 - -0.4
113,910 + -0.3
113,922 + +0.1
113,941 - -0.9
113,954 + -0.3
113,955 + +0.1
113,963 - +0.1
114,092 + DVU0089 0.19 -1.0
114,304 + DVU0089 0.46 +0.3
114,351 - DVU0089 0.52 +0.1
114,405 - DVU0089 0.58 -0.2
114,441 + DVU0089 0.63 -1.0
114,464 + DVU0089 0.66 -1.0
114,508 + DVU0089 0.71 +0.4
114,521 - DVU0089 0.73 +0.2
114,600 + DVU0089 0.83 -0.2
114,600 + DVU0089 0.83 +0.1
114,600 + DVU0089 0.83 -0.3
114,608 - DVU0089 0.84 +0.5
114,720 + -0.1
114,848 + +0.2

Or see this region's nucleotide sequence