Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005099

Experiment: Mixed culture; Alteromonas stellipolaris PQQ42 1:1 starting OD to Burkholderia

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_005097 and ABIE53_005098 overlap by 19 nucleotidesABIE53_005098 and ABIE53_005099 are separated by 141 nucleotidesABIE53_005099 and ABIE53_005100 are separated by 202 nucleotidesABIE53_005100 and ABIE53_005101 are separated by 99 nucleotides ABIE53_005097: ABIE53_005097 - 2-hydroxychromene-2-carboxylate isomerase, at 1,346,374 to 1,347,003 _005097 ABIE53_005098: ABIE53_005098 - hypothetical protein, at 1,346,985 to 1,347,242 _005098 ABIE53_005099: ABIE53_005099 - cell division protein FtsI/penicillin-binding protein 2, at 1,347,384 to 1,348,508 _005099 ABIE53_005100: ABIE53_005100 - hypothetical protein, at 1,348,711 to 1,349,307 _005100 ABIE53_005101: ABIE53_005101 - methyl-accepting chemotaxis protein, at 1,349,407 to 1,350,948 _005101 Position (kb) 1347 1348 1349Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1346.443 kb on + strand, within ABIE53_005097at 1346.443 kb on + strand, within ABIE53_005097at 1346.443 kb on + strand, within ABIE53_005097at 1346.443 kb on + strand, within ABIE53_005097at 1346.443 kb on + strand, within ABIE53_005097at 1346.443 kb on + strand, within ABIE53_005097at 1346.443 kb on + strand, within ABIE53_005097at 1346.443 kb on + strand, within ABIE53_005097at 1346.443 kb on + strand, within ABIE53_005097at 1346.443 kb on + strand, within ABIE53_005097at 1346.443 kb on + strand, within ABIE53_005097at 1346.444 kb on - strand, within ABIE53_005097at 1346.444 kb on - strand, within ABIE53_005097at 1346.444 kb on - strand, within ABIE53_005097at 1346.444 kb on - strand, within ABIE53_005097at 1346.444 kb on - strand, within ABIE53_005097at 1346.444 kb on - strand, within ABIE53_005097at 1346.444 kb on - strand, within ABIE53_005097at 1346.444 kb on - strand, within ABIE53_005097at 1346.449 kb on + strand, within ABIE53_005097at 1346.449 kb on + strand, within ABIE53_005097at 1346.449 kb on + strand, within ABIE53_005097at 1346.450 kb on - strand, within ABIE53_005097at 1346.450 kb on - strand, within ABIE53_005097at 1346.450 kb on - strand, within ABIE53_005097at 1346.499 kb on + strand, within ABIE53_005097at 1346.499 kb on + strand, within ABIE53_005097at 1346.499 kb on + strand, within ABIE53_005097at 1346.499 kb on + strand, within ABIE53_005097at 1346.500 kb on - strand, within ABIE53_005097at 1346.500 kb on - strand, within ABIE53_005097at 1346.500 kb on - strand, within ABIE53_005097at 1346.590 kb on + strand, within ABIE53_005097at 1346.590 kb on + strand, within ABIE53_005097at 1346.590 kb on + strand, within ABIE53_005097at 1346.591 kb on - strand, within ABIE53_005097at 1346.591 kb on - strand, within ABIE53_005097at 1346.591 kb on - strand, within ABIE53_005097at 1346.591 kb on - strand, within ABIE53_005097at 1346.605 kb on - strand, within ABIE53_005097at 1346.605 kb on - strand, within ABIE53_005097at 1346.626 kb on + strand, within ABIE53_005097at 1346.626 kb on + strand, within ABIE53_005097at 1346.626 kb on + strand, within ABIE53_005097at 1346.626 kb on + strand, within ABIE53_005097at 1346.627 kb on - strand, within ABIE53_005097at 1346.627 kb on - strand, within ABIE53_005097at 1346.627 kb on - strand, within ABIE53_005097at 1346.627 kb on - strand, within ABIE53_005097at 1346.627 kb on - strand, within ABIE53_005097at 1346.627 kb on - strand, within ABIE53_005097at 1346.725 kb on + strand, within ABIE53_005097at 1346.725 kb on + strand, within ABIE53_005097at 1346.725 kb on + strand, within ABIE53_005097at 1346.726 kb on - strand, within ABIE53_005097at 1346.726 kb on - strand, within ABIE53_005097at 1347.281 kb on - strandat 1347.374 kb on + strandat 1347.375 kb on - strandat 1347.385 kb on + strandat 1347.386 kb on - strandat 1347.386 kb on - strandat 1347.386 kb on - strandat 1347.617 kb on - strand, within ABIE53_005099at 1347.848 kb on - strand, within ABIE53_005099at 1347.856 kb on + strand, within ABIE53_005099at 1347.856 kb on + strand, within ABIE53_005099at 1347.857 kb on - strand, within ABIE53_005099at 1347.857 kb on - strand, within ABIE53_005099at 1347.857 kb on - strand, within ABIE53_005099at 1347.857 kb on - strand, within ABIE53_005099at 1347.902 kb on - strand, within ABIE53_005099at 1347.908 kb on + strand, within ABIE53_005099at 1347.908 kb on + strand, within ABIE53_005099at 1347.924 kb on - strand, within ABIE53_005099at 1347.924 kb on - strand, within ABIE53_005099at 1347.940 kb on + strand, within ABIE53_005099at 1347.940 kb on + strand, within ABIE53_005099at 1348.003 kb on + strand, within ABIE53_005099at 1348.003 kb on + strand, within ABIE53_005099at 1348.004 kb on - strand, within ABIE53_005099at 1348.004 kb on - strand, within ABIE53_005099at 1348.013 kb on - strand, within ABIE53_005099at 1348.013 kb on - strand, within ABIE53_005099at 1348.013 kb on - strand, within ABIE53_005099at 1348.150 kb on + strand, within ABIE53_005099at 1348.150 kb on + strand, within ABIE53_005099at 1348.150 kb on + strand, within ABIE53_005099at 1348.253 kb on + strand, within ABIE53_005099at 1348.253 kb on + strand, within ABIE53_005099at 1348.253 kb on + strand, within ABIE53_005099at 1348.254 kb on - strand, within ABIE53_005099at 1348.254 kb on - strand, within ABIE53_005099at 1348.254 kb on - strand, within ABIE53_005099at 1348.325 kb on - strand, within ABIE53_005099at 1348.413 kb on + strandat 1348.413 kb on + strandat 1348.414 kb on - strandat 1348.424 kb on - strandat 1348.617 kb on + strandat 1348.655 kb on + strandat 1348.868 kb on + strand, within ABIE53_005100at 1348.869 kb on - strand, within ABIE53_005100at 1348.869 kb on - strand, within ABIE53_005100at 1348.952 kb on + strand, within ABIE53_005100at 1348.976 kb on + strand, within ABIE53_005100at 1348.976 kb on + strand, within ABIE53_005100at 1348.976 kb on + strand, within ABIE53_005100at 1348.976 kb on + strand, within ABIE53_005100at 1348.976 kb on + strand, within ABIE53_005100at 1348.976 kb on + strand, within ABIE53_005100at 1348.977 kb on - strand, within ABIE53_005100at 1348.977 kb on - strand, within ABIE53_005100at 1348.977 kb on - strand, within ABIE53_005100at 1348.977 kb on - strand, within ABIE53_005100at 1349.117 kb on + strand, within ABIE53_005100at 1349.117 kb on + strand, within ABIE53_005100at 1349.118 kb on - strand, within ABIE53_005100at 1349.118 kb on - strand, within ABIE53_005100at 1349.177 kb on + strand, within ABIE53_005100at 1349.178 kb on - strand, within ABIE53_005100at 1349.199 kb on + strand, within ABIE53_005100at 1349.199 kb on + strand, within ABIE53_005100at 1349.199 kb on + strand, within ABIE53_005100at 1349.199 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.210 kb on + strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.211 kb on - strand, within ABIE53_005100at 1349.227 kb on + strand, within ABIE53_005100at 1349.255 kb on + strandat 1349.256 kb on - strandat 1349.446 kb on + strandat 1349.447 kb on - strandat 1349.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Alteromonas stellipolaris PQQ42 1:1 starting OD to Burkholderia
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1,346,443 + ABIE53_005097 0.11 -0.6
1,346,443 + ABIE53_005097 0.11 -0.5
1,346,443 + ABIE53_005097 0.11 +0.0
1,346,443 + ABIE53_005097 0.11 +0.8
1,346,443 + ABIE53_005097 0.11 -1.1
1,346,443 + ABIE53_005097 0.11 -0.7
1,346,443 + ABIE53_005097 0.11 +1.4
1,346,443 + ABIE53_005097 0.11 -0.2
1,346,443 + ABIE53_005097 0.11 -0.4
1,346,443 + ABIE53_005097 0.11 -0.4
1,346,443 + ABIE53_005097 0.11 -1.4
1,346,444 - ABIE53_005097 0.11 -0.0
1,346,444 - ABIE53_005097 0.11 -0.4
1,346,444 - ABIE53_005097 0.11 -0.4
1,346,444 - ABIE53_005097 0.11 +0.6
1,346,444 - ABIE53_005097 0.11 -0.4
1,346,444 - ABIE53_005097 0.11 +0.2
1,346,444 - ABIE53_005097 0.11 +0.8
1,346,444 - ABIE53_005097 0.11 +1.8
1,346,449 + ABIE53_005097 0.12 -0.5
1,346,449 + ABIE53_005097 0.12 +0.8
1,346,449 + ABIE53_005097 0.12 +0.8
1,346,450 - ABIE53_005097 0.12 +0.3
1,346,450 - ABIE53_005097 0.12 -0.7
1,346,450 - ABIE53_005097 0.12 -0.4
1,346,499 + ABIE53_005097 0.20 -0.2
1,346,499 + ABIE53_005097 0.20 -1.6
1,346,499 + ABIE53_005097 0.20 +1.8
1,346,499 + ABIE53_005097 0.20 -0.2
1,346,500 - ABIE53_005097 0.20 +2.4
1,346,500 - ABIE53_005097 0.20 -0.3
1,346,500 - ABIE53_005097 0.20 -0.2
1,346,590 + ABIE53_005097 0.34 +3.4
1,346,590 + ABIE53_005097 0.34 -1.5
1,346,590 + ABIE53_005097 0.34 -0.5
1,346,591 - ABIE53_005097 0.34 -0.2
1,346,591 - ABIE53_005097 0.34 -0.2
1,346,591 - ABIE53_005097 0.34 -0.7
1,346,591 - ABIE53_005097 0.34 -0.3
1,346,605 - ABIE53_005097 0.37 -1.5
1,346,605 - ABIE53_005097 0.37 -1.3
1,346,626 + ABIE53_005097 0.40 +0.8
1,346,626 + ABIE53_005097 0.40 -0.2
1,346,626 + ABIE53_005097 0.40 -0.4
1,346,626 + ABIE53_005097 0.40 -1.0
1,346,627 - ABIE53_005097 0.40 -0.2
1,346,627 - ABIE53_005097 0.40 +1.2
1,346,627 - ABIE53_005097 0.40 +0.8
1,346,627 - ABIE53_005097 0.40 -0.2
1,346,627 - ABIE53_005097 0.40 +1.3
1,346,627 - ABIE53_005097 0.40 -1.2
1,346,725 + ABIE53_005097 0.56 -1.2
1,346,725 + ABIE53_005097 0.56 +1.8
1,346,725 + ABIE53_005097 0.56 -0.7
1,346,726 - ABIE53_005097 0.56 -1.2
1,346,726 - ABIE53_005097 0.56 -0.4
1,347,281 - -1.6
1,347,374 + +1.8
1,347,375 - -0.3
1,347,385 + +0.0
1,347,386 - -2.0
1,347,386 - -1.3
1,347,386 - -0.2
1,347,617 - ABIE53_005099 0.21 -1.2
1,347,848 - ABIE53_005099 0.41 -0.2
1,347,856 + ABIE53_005099 0.42 -2.9
1,347,856 + ABIE53_005099 0.42 -0.7
1,347,857 - ABIE53_005099 0.42 -4.4
1,347,857 - ABIE53_005099 0.42 -0.9
1,347,857 - ABIE53_005099 0.42 -1.5
1,347,857 - ABIE53_005099 0.42 -1.5
1,347,902 - ABIE53_005099 0.46 +0.8
1,347,908 + ABIE53_005099 0.47 -2.2
1,347,908 + ABIE53_005099 0.47 +0.1
1,347,924 - ABIE53_005099 0.48 -1.7
1,347,924 - ABIE53_005099 0.48 -2.0
1,347,940 + ABIE53_005099 0.49 -2.7
1,347,940 + ABIE53_005099 0.49 -0.3
1,348,003 + ABIE53_005099 0.55 -1.5
1,348,003 + ABIE53_005099 0.55 -2.9
1,348,004 - ABIE53_005099 0.55 +0.8
1,348,004 - ABIE53_005099 0.55 -0.2
1,348,013 - ABIE53_005099 0.56 -3.8
1,348,013 - ABIE53_005099 0.56 -0.7
1,348,013 - ABIE53_005099 0.56 -2.3
1,348,150 + ABIE53_005099 0.68 -1.5
1,348,150 + ABIE53_005099 0.68 -1.2
1,348,150 + ABIE53_005099 0.68 -0.2
1,348,253 + ABIE53_005099 0.77 -0.2
1,348,253 + ABIE53_005099 0.77 -2.2
1,348,253 + ABIE53_005099 0.77 -1.7
1,348,254 - ABIE53_005099 0.77 -3.0
1,348,254 - ABIE53_005099 0.77 -3.3
1,348,254 - ABIE53_005099 0.77 +0.8
1,348,325 - ABIE53_005099 0.84 -0.9
1,348,413 + +0.8
1,348,413 + -2.5
1,348,414 - +1.6
1,348,424 - -2.0
1,348,617 + +0.8
1,348,655 + -0.2
1,348,868 + ABIE53_005100 0.26 -2.9
1,348,869 - ABIE53_005100 0.26 -3.8
1,348,869 - ABIE53_005100 0.26 -2.3
1,348,952 + ABIE53_005100 0.40 -3.7
1,348,976 + ABIE53_005100 0.44 -1.5
1,348,976 + ABIE53_005100 0.44 -1.0
1,348,976 + ABIE53_005100 0.44 -3.0
1,348,976 + ABIE53_005100 0.44 -2.0
1,348,976 + ABIE53_005100 0.44 -1.3
1,348,976 + ABIE53_005100 0.44 -2.5
1,348,977 - ABIE53_005100 0.45 -0.9
1,348,977 - ABIE53_005100 0.45 -3.0
1,348,977 - ABIE53_005100 0.45 -2.6
1,348,977 - ABIE53_005100 0.45 -4.0
1,349,117 + ABIE53_005100 0.68 -1.5
1,349,117 + ABIE53_005100 0.68 -1.6
1,349,118 - ABIE53_005100 0.68 -3.2
1,349,118 - ABIE53_005100 0.68 -2.2
1,349,177 + ABIE53_005100 0.78 -1.1
1,349,178 - ABIE53_005100 0.78 -0.7
1,349,199 + ABIE53_005100 0.82 +0.1
1,349,199 + ABIE53_005100 0.82 -0.0
1,349,199 + ABIE53_005100 0.82 -0.3
1,349,199 + ABIE53_005100 0.82 -2.1
1,349,210 + ABIE53_005100 0.84 +0.8
1,349,210 + ABIE53_005100 0.84 +1.4
1,349,210 + ABIE53_005100 0.84 -1.4
1,349,210 + ABIE53_005100 0.84 -0.6
1,349,210 + ABIE53_005100 0.84 -1.6
1,349,210 + ABIE53_005100 0.84 -0.5
1,349,210 + ABIE53_005100 0.84 +0.8
1,349,210 + ABIE53_005100 0.84 -0.2
1,349,211 - ABIE53_005100 0.84 -0.3
1,349,211 - ABIE53_005100 0.84 +1.2
1,349,211 - ABIE53_005100 0.84 -1.1
1,349,211 - ABIE53_005100 0.84 +0.1
1,349,211 - ABIE53_005100 0.84 +0.1
1,349,211 - ABIE53_005100 0.84 -1.0
1,349,211 - ABIE53_005100 0.84 -1.2
1,349,211 - ABIE53_005100 0.84 +1.2
1,349,227 + ABIE53_005100 0.86 -1.0
1,349,255 + +1.1
1,349,256 - +0.8
1,349,446 + -1.3
1,349,447 - +0.1
1,349,447 - +0.7

Or see this region's nucleotide sequence