Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2601

Experiment: MoYLS4 media with N2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2600 and DvMF_2601 are separated by 256 nucleotidesDvMF_2601 and DvMF_2602 overlap by 4 nucleotides DvMF_2600: DvMF_2600 - beta-lactamase domain protein (RefSeq), at 3,284,950 to 3,285,975 _2600 DvMF_2601: DvMF_2601 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,286,232 to 3,287,632 _2601 DvMF_2602: DvMF_2602 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 3,287,629 to 3,290,469 _2602 Position (kb) 3286 3287 3288Strain fitness (log2 ratio) -1 0 1at 3285.266 kb on - strand, within DvMF_2600at 3285.448 kb on - strand, within DvMF_2600at 3285.482 kb on + strand, within DvMF_2600at 3285.625 kb on + strand, within DvMF_2600at 3285.628 kb on - strand, within DvMF_2600at 3285.750 kb on + strand, within DvMF_2600at 3285.759 kb on + strand, within DvMF_2600at 3285.999 kb on - strandat 3286.090 kb on + strandat 3286.346 kb on - strandat 3286.408 kb on + strand, within DvMF_2601at 3286.422 kb on - strand, within DvMF_2601at 3286.630 kb on - strand, within DvMF_2601at 3286.656 kb on - strand, within DvMF_2601at 3286.897 kb on + strand, within DvMF_2601at 3286.965 kb on + strand, within DvMF_2601at 3286.973 kb on - strand, within DvMF_2601at 3286.973 kb on - strand, within DvMF_2601at 3286.973 kb on - strand, within DvMF_2601at 3287.121 kb on + strand, within DvMF_2601at 3287.129 kb on - strand, within DvMF_2601at 3287.129 kb on - strand, within DvMF_2601at 3287.254 kb on - strand, within DvMF_2601at 3287.290 kb on + strand, within DvMF_2601at 3287.484 kb on + strand, within DvMF_2601at 3287.506 kb on - strandat 3287.636 kb on - strandat 3287.643 kb on - strandat 3287.694 kb on + strandat 3287.985 kb on + strand, within DvMF_2602at 3288.087 kb on + strand, within DvMF_2602at 3288.587 kb on + strand, within DvMF_2602at 3288.627 kb on - strand, within DvMF_2602

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2
remove
3,285,266 - DvMF_2600 0.31 -0.0
3,285,448 - DvMF_2600 0.49 -0.2
3,285,482 + DvMF_2600 0.52 -0.0
3,285,625 + DvMF_2600 0.66 -0.3
3,285,628 - DvMF_2600 0.66 -0.8
3,285,750 + DvMF_2600 0.78 -0.4
3,285,759 + DvMF_2600 0.79 -0.1
3,285,999 - -0.3
3,286,090 + -0.3
3,286,346 - -0.2
3,286,408 + DvMF_2601 0.13 +0.3
3,286,422 - DvMF_2601 0.14 -0.2
3,286,630 - DvMF_2601 0.28 -0.0
3,286,656 - DvMF_2601 0.30 -0.1
3,286,897 + DvMF_2601 0.47 +0.2
3,286,965 + DvMF_2601 0.52 +0.2
3,286,973 - DvMF_2601 0.53 -0.1
3,286,973 - DvMF_2601 0.53 +0.3
3,286,973 - DvMF_2601 0.53 -0.0
3,287,121 + DvMF_2601 0.63 -0.1
3,287,129 - DvMF_2601 0.64 +0.2
3,287,129 - DvMF_2601 0.64 +0.5
3,287,254 - DvMF_2601 0.73 +0.1
3,287,290 + DvMF_2601 0.76 +0.5
3,287,484 + DvMF_2601 0.89 -0.2
3,287,506 - -0.6
3,287,636 - +0.2
3,287,643 - -0.2
3,287,694 + +0.1
3,287,985 + DvMF_2602 0.13 -0.2
3,288,087 + DvMF_2602 0.16 +0.1
3,288,587 + DvMF_2602 0.34 -1.2
3,288,627 - DvMF_2602 0.35 -0.2

Or see this region's nucleotide sequence