Experiment: MoYLS4 media with N2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2599 and DvMF_2600 are separated by 123 nucleotides DvMF_2600 and DvMF_2601 are separated by 256 nucleotides
DvMF_2599: DvMF_2599 - Xylose isomerase domain protein TIM barrel (RefSeq), at 3,283,978 to 3,284,826
_2599
DvMF_2600: DvMF_2600 - beta-lactamase domain protein (RefSeq), at 3,284,950 to 3,285,975
_2600
DvMF_2601: DvMF_2601 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,286,232 to 3,287,632
_2601
Position (kb)
3284
3285
3286 Strain fitness (log2 ratio)
-1
0
1 at 3284.130 kb on + strand, within DvMF_2599 at 3284.151 kb on + strand, within DvMF_2599 at 3284.151 kb on + strand, within DvMF_2599 at 3284.159 kb on - strand, within DvMF_2599 at 3284.548 kb on + strand, within DvMF_2599 at 3284.555 kb on + strand, within DvMF_2599 at 3284.555 kb on + strand, within DvMF_2599 at 3284.622 kb on - strand, within DvMF_2599 at 3284.686 kb on - strand, within DvMF_2599 at 3284.704 kb on - strand, within DvMF_2599 at 3284.885 kb on - strand at 3285.057 kb on + strand, within DvMF_2600 at 3285.144 kb on + strand, within DvMF_2600 at 3285.266 kb on - strand, within DvMF_2600 at 3285.448 kb on - strand, within DvMF_2600 at 3285.482 kb on + strand, within DvMF_2600 at 3285.625 kb on + strand, within DvMF_2600 at 3285.628 kb on - strand, within DvMF_2600 at 3285.750 kb on + strand, within DvMF_2600 at 3285.759 kb on + strand, within DvMF_2600 at 3285.999 kb on - strand at 3286.090 kb on + strand at 3286.346 kb on - strand at 3286.408 kb on + strand, within DvMF_2601 at 3286.422 kb on - strand, within DvMF_2601 at 3286.630 kb on - strand, within DvMF_2601 at 3286.656 kb on - strand, within DvMF_2601 at 3286.897 kb on + strand, within DvMF_2601 at 3286.965 kb on + strand, within DvMF_2601 at 3286.973 kb on - strand, within DvMF_2601 at 3286.973 kb on - strand, within DvMF_2601 at 3286.973 kb on - strand, within DvMF_2601
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with N2 remove 3,284,130 + DvMF_2599 0.18 -0.2 3,284,151 + DvMF_2599 0.20 -0.2 3,284,151 + DvMF_2599 0.20 -0.3 3,284,159 - DvMF_2599 0.21 -0.1 3,284,548 + DvMF_2599 0.67 +0.1 3,284,555 + DvMF_2599 0.68 +0.2 3,284,555 + DvMF_2599 0.68 +0.5 3,284,622 - DvMF_2599 0.76 +0.1 3,284,686 - DvMF_2599 0.83 -0.4 3,284,704 - DvMF_2599 0.86 -0.8 3,284,885 - -0.6 3,285,057 + DvMF_2600 0.10 -0.1 3,285,144 + DvMF_2600 0.19 -0.3 3,285,266 - DvMF_2600 0.31 -0.0 3,285,448 - DvMF_2600 0.49 -0.2 3,285,482 + DvMF_2600 0.52 -0.0 3,285,625 + DvMF_2600 0.66 -0.3 3,285,628 - DvMF_2600 0.66 -0.8 3,285,750 + DvMF_2600 0.78 -0.4 3,285,759 + DvMF_2600 0.79 -0.1 3,285,999 - -0.3 3,286,090 + -0.3 3,286,346 - -0.2 3,286,408 + DvMF_2601 0.13 +0.3 3,286,422 - DvMF_2601 0.14 -0.2 3,286,630 - DvMF_2601 0.28 -0.0 3,286,656 - DvMF_2601 0.30 -0.1 3,286,897 + DvMF_2601 0.47 +0.2 3,286,965 + DvMF_2601 0.52 +0.2 3,286,973 - DvMF_2601 0.53 -0.1 3,286,973 - DvMF_2601 0.53 +0.3 3,286,973 - DvMF_2601 0.53 -0.0
Or see this region's nucleotide sequence