Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2573

Experiment: MoYLS4 media with N2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2572 and DvMF_2573 overlap by 1 nucleotidesDvMF_2573 and DvMF_2574 overlap by 4 nucleotides DvMF_2572: DvMF_2572 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,251,081 to 3,252,637 _2572 DvMF_2573: DvMF_2573 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,252,637 to 3,254,838 _2573 DvMF_2574: DvMF_2574 - Osmosensitive K channel His kinase sensor (RefSeq), at 3,254,835 to 3,255,962 _2574 Position (kb) 3252 3253 3254 3255Strain fitness (log2 ratio) -1 0 1at 3252.011 kb on - strand, within DvMF_2572at 3252.190 kb on + strand, within DvMF_2572at 3252.597 kb on + strandat 3252.637 kb on - strandat 3252.646 kb on - strandat 3252.845 kb on - strandat 3252.855 kb on - strandat 3253.027 kb on - strand, within DvMF_2573at 3253.200 kb on + strand, within DvMF_2573at 3253.247 kb on - strand, within DvMF_2573at 3253.262 kb on - strand, within DvMF_2573at 3253.517 kb on + strand, within DvMF_2573at 3253.696 kb on + strand, within DvMF_2573at 3253.699 kb on - strand, within DvMF_2573at 3253.709 kb on - strand, within DvMF_2573at 3253.736 kb on + strand, within DvMF_2573at 3253.771 kb on + strand, within DvMF_2573at 3253.870 kb on - strand, within DvMF_2573at 3254.612 kb on - strand, within DvMF_2573at 3254.718 kb on + strandat 3254.828 kb on - strandat 3254.873 kb on + strandat 3255.022 kb on - strand, within DvMF_2574at 3255.355 kb on - strand, within DvMF_2574at 3255.392 kb on - strand, within DvMF_2574at 3255.461 kb on + strand, within DvMF_2574at 3255.721 kb on - strand, within DvMF_2574at 3255.761 kb on + strand, within DvMF_2574at 3255.761 kb on + strand, within DvMF_2574at 3255.761 kb on + strand, within DvMF_2574

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2
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3,252,011 - DvMF_2572 0.60 +0.1
3,252,190 + DvMF_2572 0.71 +0.1
3,252,597 + +0.3
3,252,637 - -0.9
3,252,646 - -0.1
3,252,845 - +0.1
3,252,855 - -0.9
3,253,027 - DvMF_2573 0.18 -0.5
3,253,200 + DvMF_2573 0.26 +0.2
3,253,247 - DvMF_2573 0.28 -0.4
3,253,262 - DvMF_2573 0.28 -0.3
3,253,517 + DvMF_2573 0.40 -0.4
3,253,696 + DvMF_2573 0.48 -0.3
3,253,699 - DvMF_2573 0.48 -0.6
3,253,709 - DvMF_2573 0.49 -0.6
3,253,736 + DvMF_2573 0.50 -0.4
3,253,771 + DvMF_2573 0.51 -1.5
3,253,870 - DvMF_2573 0.56 -1.3
3,254,612 - DvMF_2573 0.90 -1.0
3,254,718 + +0.6
3,254,828 - +0.1
3,254,873 + -0.3
3,255,022 - DvMF_2574 0.17 -0.2
3,255,355 - DvMF_2574 0.46 -0.4
3,255,392 - DvMF_2574 0.49 -0.1
3,255,461 + DvMF_2574 0.55 -0.4
3,255,721 - DvMF_2574 0.79 -0.5
3,255,761 + DvMF_2574 0.82 -0.4
3,255,761 + DvMF_2574 0.82 -0.6
3,255,761 + DvMF_2574 0.82 -0.6

Or see this region's nucleotide sequence