Experiment: MoYLS4 media with N2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1707 and DvMF_1708 are separated by 61 nucleotides DvMF_1708 and DvMF_1709 are separated by 105 nucleotides DvMF_1709 and DvMF_1710 are separated by 27 nucleotides
DvMF_1707: DvMF_1707 - protein of unknown function UPF0118 (RefSeq), at 2,085,102 to 2,086,616
_1707
DvMF_1708: DvMF_1708 - transcriptional regulator, Crp/Fnr family (RefSeq), at 2,086,678 to 2,087,367
_1708
DvMF_1709: DvMF_1709 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein (RefSeq), at 2,087,473 to 2,087,829
_1709
DvMF_1710: DvMF_1710 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein (RefSeq), at 2,087,857 to 2,089,641
_1710
Position (kb)
2086
2087
2088 Strain fitness (log2 ratio)
-1
0
1 at 2085.783 kb on - strand, within DvMF_1707 at 2086.016 kb on - strand, within DvMF_1707 at 2086.272 kb on - strand, within DvMF_1707 at 2086.384 kb on + strand, within DvMF_1707 at 2086.392 kb on - strand, within DvMF_1707 at 2086.449 kb on + strand, within DvMF_1707 at 2086.604 kb on - strand at 2086.609 kb on - strand at 2086.678 kb on + strand at 2086.678 kb on + strand at 2086.937 kb on - strand, within DvMF_1708 at 2086.992 kb on + strand, within DvMF_1708 at 2086.994 kb on - strand, within DvMF_1708 at 2087.459 kb on + strand at 2087.477 kb on - strand at 2087.601 kb on - strand, within DvMF_1709 at 2087.606 kb on + strand, within DvMF_1709 at 2087.606 kb on + strand, within DvMF_1709 at 2087.766 kb on - strand, within DvMF_1709 at 2087.803 kb on - strand at 2087.854 kb on + strand at 2087.902 kb on + strand at 2088.060 kb on + strand, within DvMF_1710 at 2088.070 kb on + strand, within DvMF_1710 at 2088.090 kb on + strand, within DvMF_1710 at 2088.090 kb on + strand, within DvMF_1710 at 2088.166 kb on + strand, within DvMF_1710
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with N2 remove 2,085,783 - DvMF_1707 0.45 -0.4 2,086,016 - DvMF_1707 0.60 -0.5 2,086,272 - DvMF_1707 0.77 -0.5 2,086,384 + DvMF_1707 0.85 -0.0 2,086,392 - DvMF_1707 0.85 -0.2 2,086,449 + DvMF_1707 0.89 -0.5 2,086,604 - -0.7 2,086,609 - -0.8 2,086,678 + -0.5 2,086,678 + -0.1 2,086,937 - DvMF_1708 0.38 -0.1 2,086,992 + DvMF_1708 0.46 +0.3 2,086,994 - DvMF_1708 0.46 -0.1 2,087,459 + -1.3 2,087,477 - -0.8 2,087,601 - DvMF_1709 0.36 +0.5 2,087,606 + DvMF_1709 0.37 -0.4 2,087,606 + DvMF_1709 0.37 -0.5 2,087,766 - DvMF_1709 0.82 -0.3 2,087,803 - -0.2 2,087,854 + -0.1 2,087,902 + +0.2 2,088,060 + DvMF_1710 0.11 -0.3 2,088,070 + DvMF_1710 0.12 -0.1 2,088,090 + DvMF_1710 0.13 +0.0 2,088,090 + DvMF_1710 0.13 +0.6 2,088,166 + DvMF_1710 0.17 +0.2
Or see this region's nucleotide sequence