Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1557

Experiment: MoYLS4 media with N2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1556 and DvMF_1557 are separated by 461 nucleotidesDvMF_1557 and DvMF_1558 are separated by 128 nucleotidesDvMF_1558 and DvMF_1559 are separated by 86 nucleotides DvMF_1556: DvMF_1556 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,919,938 to 1,921,626 _1556 DvMF_1557: DvMF_1557 - hypothetical protein (RefSeq), at 1,922,088 to 1,922,984 _1557 DvMF_1558: DvMF_1558 - transcriptional regulator, MarR family (RefSeq), at 1,923,113 to 1,923,562 _1558 DvMF_1559: DvMF_1559 - sodium/sulphate symporter (RefSeq), at 1,923,649 to 1,925,157 _1559 Position (kb) 1922 1923Strain fitness (log2 ratio) -2 -1 0 1at 1922.073 kb on + strandat 1922.117 kb on - strandat 1922.138 kb on + strandat 1922.295 kb on - strand, within DvMF_1557at 1922.773 kb on - strand, within DvMF_1557at 1922.856 kb on - strand, within DvMF_1557at 1922.856 kb on - strand, within DvMF_1557at 1922.856 kb on - strand, within DvMF_1557at 1922.937 kb on - strandat 1923.319 kb on - strand, within DvMF_1558at 1923.584 kb on - strandat 1923.708 kb on - strandat 1923.782 kb on + strandat 1923.782 kb on - strandat 1923.913 kb on + strand, within DvMF_1559

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2
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1,922,073 + -1.1
1,922,117 - -0.3
1,922,138 + +0.2
1,922,295 - DvMF_1557 0.23 -1.8
1,922,773 - DvMF_1557 0.76 -0.6
1,922,856 - DvMF_1557 0.86 -0.0
1,922,856 - DvMF_1557 0.86 -0.6
1,922,856 - DvMF_1557 0.86 -0.2
1,922,937 - -0.2
1,923,319 - DvMF_1558 0.46 -0.5
1,923,584 - -0.1
1,923,708 - -0.2
1,923,782 + -0.4
1,923,782 - -0.6
1,923,913 + DvMF_1559 0.17 -0.5

Or see this region's nucleotide sequence