Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0039

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0037 and b0983 overlap by 1 nucleotidesb0983 and DVUA0039 are separated by 0 nucleotidesDVUA0039 and DVUA0040 are separated by 10 nucleotides DVUA0037: DVUA0037 - sugar transferase domain protein (TIGR), at 44,190 to 45,644 DVUA0037 DVUA0038: b0983 - capsular polysaccharide transport protein (TIGR), at 45,644 to 46,450 b0983 DVUA0039: DVUA0039 - chain length determinant family protein (TIGR), at 46,451 to 47,953 DVUA0039 DVUA0040: DVUA0040 - polysaccharide biosynthesis protein, putative (TIGR), at 47,964 to 49,082 DVUA0040 Position (kb) 46 47 48Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 45.704 kb on - strandat 45.804 kb on + strand, within b0983at 45.812 kb on - strand, within b0983at 45.842 kb on + strand, within b0983at 45.842 kb on + strand, within b0983at 45.850 kb on - strand, within b0983at 45.859 kb on + strand, within b0983at 45.860 kb on + strand, within b0983at 45.901 kb on - strand, within b0983at 45.960 kb on + strand, within b0983at 46.093 kb on - strand, within b0983at 46.227 kb on + strand, within b0983at 46.234 kb on - strand, within b0983at 46.243 kb on + strand, within b0983at 46.245 kb on + strand, within b0983at 46.250 kb on + strand, within b0983at 46.267 kb on + strand, within b0983at 46.280 kb on + strand, within b0983at 46.345 kb on + strand, within b0983at 46.574 kb on - strandat 46.577 kb on + strandat 46.587 kb on + strandat 46.632 kb on + strand, within DVUA0039at 46.669 kb on + strand, within DVUA0039at 46.677 kb on - strand, within DVUA0039at 46.716 kb on + strand, within DVUA0039at 46.724 kb on - strand, within DVUA0039at 46.732 kb on - strand, within DVUA0039at 46.732 kb on - strand, within DVUA0039at 46.732 kb on - strand, within DVUA0039at 46.740 kb on + strand, within DVUA0039at 46.809 kb on - strand, within DVUA0039at 46.855 kb on + strand, within DVUA0039at 46.855 kb on + strand, within DVUA0039at 46.948 kb on + strand, within DVUA0039at 46.956 kb on - strand, within DVUA0039at 47.034 kb on - strand, within DVUA0039at 47.134 kb on - strand, within DVUA0039at 47.251 kb on + strand, within DVUA0039at 47.391 kb on + strand, within DVUA0039at 47.456 kb on + strand, within DVUA0039at 47.456 kb on + strand, within DVUA0039at 47.635 kb on - strand, within DVUA0039at 47.687 kb on + strand, within DVUA0039at 47.699 kb on - strand, within DVUA0039at 47.732 kb on + strand, within DVUA0039at 47.741 kb on - strand, within DVUA0039at 47.772 kb on - strand, within DVUA0039at 47.857 kb on + strandat 47.900 kb on - strandat 47.912 kb on + strandat 48.047 kb on + strandat 48.047 kb on + strandat 48.047 kb on + strandat 48.055 kb on - strandat 48.100 kb on + strand, within DVUA0040at 48.100 kb on + strand, within DVUA0040at 48.100 kb on + strand, within DVUA0040at 48.100 kb on + strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.158 kb on - strand, within DVUA0040at 48.320 kb on + strand, within DVUA0040at 48.320 kb on + strand, within DVUA0040at 48.328 kb on - strand, within DVUA0040at 48.356 kb on + strand, within DVUA0040at 48.382 kb on - strand, within DVUA0040at 48.392 kb on - strand, within DVUA0040at 48.433 kb on - strand, within DVUA0040at 48.468 kb on + strand, within DVUA0040at 48.585 kb on - strand, within DVUA0040at 48.642 kb on - strand, within DVUA0040at 48.696 kb on - strand, within DVUA0040at 48.729 kb on + strand, within DVUA0040at 48.792 kb on - strand, within DVUA0040at 48.794 kb on + strand, within DVUA0040at 48.944 kb on - strand, within DVUA0040

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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45,704 - -0.8
45,804 + b0983 DVUA0038 0.20 -0.2
45,812 - b0983 DVUA0038 0.21 +0.8
45,842 + b0983 DVUA0038 0.25 -1.9
45,842 + b0983 DVUA0038 0.25 -1.3
45,850 - b0983 DVUA0038 0.26 -2.2
45,859 + b0983 DVUA0038 0.27 +0.4
45,860 + b0983 DVUA0038 0.27 -1.8
45,901 - b0983 DVUA0038 0.32 -1.0
45,960 + b0983 DVUA0038 0.39 -0.4
46,093 - b0983 DVUA0038 0.56 -2.4
46,227 + b0983 DVUA0038 0.72 -0.6
46,234 - b0983 DVUA0038 0.73 +0.9
46,243 + b0983 DVUA0038 0.74 +0.6
46,245 + b0983 DVUA0038 0.74 -1.0
46,250 + b0983 DVUA0038 0.75 -1.3
46,267 + b0983 DVUA0038 0.77 -1.2
46,280 + b0983 DVUA0038 0.79 -1.2
46,345 + b0983 DVUA0038 0.87 -1.4
46,574 - -0.5
46,577 + -0.7
46,587 + -2.6
46,632 + DVUA0039 0.12 -1.5
46,669 + DVUA0039 0.15 +1.1
46,677 - DVUA0039 0.15 -3.7
46,716 + DVUA0039 0.18 -1.1
46,724 - DVUA0039 0.18 +0.1
46,732 - DVUA0039 0.19 +0.3
46,732 - DVUA0039 0.19 +0.7
46,732 - DVUA0039 0.19 -1.4
46,740 + DVUA0039 0.19 +1.4
46,809 - DVUA0039 0.24 +0.5
46,855 + DVUA0039 0.27 +0.5
46,855 + DVUA0039 0.27 +0.3
46,948 + DVUA0039 0.33 -1.4
46,956 - DVUA0039 0.34 -1.4
47,034 - DVUA0039 0.39 +0.5
47,134 - DVUA0039 0.45 -0.0
47,251 + DVUA0039 0.53 -0.8
47,391 + DVUA0039 0.63 +2.1
47,456 + DVUA0039 0.67 -0.4
47,456 + DVUA0039 0.67 -1.0
47,635 - DVUA0039 0.79 -0.4
47,687 + DVUA0039 0.82 -0.9
47,699 - DVUA0039 0.83 +3.1
47,732 + DVUA0039 0.85 -0.7
47,741 - DVUA0039 0.86 +1.6
47,772 - DVUA0039 0.88 -1.5
47,857 + +0.2
47,900 - +2.1
47,912 + -0.8
48,047 + +1.1
48,047 + -0.7
48,047 + -0.1
48,055 - +0.8
48,100 + DVUA0040 0.12 +1.3
48,100 + DVUA0040 0.12 +0.4
48,100 + DVUA0040 0.12 +3.0
48,100 + DVUA0040 0.12 -1.2
48,108 - DVUA0040 0.13 +2.3
48,108 - DVUA0040 0.13 +0.5
48,108 - DVUA0040 0.13 -0.3
48,108 - DVUA0040 0.13 -2.3
48,108 - DVUA0040 0.13 -1.0
48,108 - DVUA0040 0.13 -0.6
48,158 - DVUA0040 0.17 +2.1
48,320 + DVUA0040 0.32 +0.6
48,320 + DVUA0040 0.32 -2.2
48,328 - DVUA0040 0.33 -1.3
48,356 + DVUA0040 0.35 +2.1
48,382 - DVUA0040 0.37 -0.0
48,392 - DVUA0040 0.38 +1.2
48,433 - DVUA0040 0.42 -1.2
48,468 + DVUA0040 0.45 -1.0
48,585 - DVUA0040 0.55 -0.1
48,642 - DVUA0040 0.61 +0.4
48,696 - DVUA0040 0.65 -1.3
48,729 + DVUA0040 0.68 -1.8
48,792 - DVUA0040 0.74 -1.6
48,794 + DVUA0040 0.74 +3.1
48,944 - DVUA0040 0.88 -1.2

Or see this region's nucleotide sequence