Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0065

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0064 and DVUA0065 overlap by 4 nucleotidesDVUA0065 and DVUA0066 are separated by 453 nucleotides DVUA0064: DVUA0064 - conserved domain protein (TIGR), at 81,164 to 82,885 DVUA0064 DVUA0065: DVUA0065 - sensor histidine kinase (TIGR), at 82,882 to 84,918 DVUA0065 DVUA0066: DVUA0066 - phospholipase, patatin family (TIGR), at 85,372 to 86,784 DVUA0066 Position (kb) 82 83 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 81.938 kb on - strand, within DVUA0064at 81.970 kb on - strand, within DVUA0064at 82.022 kb on + strand, within DVUA0064at 82.045 kb on - strand, within DVUA0064at 82.066 kb on - strand, within DVUA0064at 82.202 kb on - strand, within DVUA0064at 82.436 kb on + strand, within DVUA0064at 82.438 kb on - strand, within DVUA0064at 82.457 kb on + strand, within DVUA0064at 82.473 kb on + strand, within DVUA0064at 82.475 kb on + strand, within DVUA0064at 82.499 kb on + strand, within DVUA0064at 82.529 kb on + strand, within DVUA0064at 82.529 kb on + strand, within DVUA0064at 82.531 kb on + strand, within DVUA0064at 82.531 kb on + strand, within DVUA0064at 82.719 kb on - strandat 82.816 kb on + strandat 82.878 kb on + strandat 82.920 kb on - strandat 83.055 kb on - strandat 83.123 kb on - strand, within DVUA0065at 83.272 kb on - strand, within DVUA0065at 83.435 kb on + strand, within DVUA0065at 83.443 kb on - strand, within DVUA0065at 83.443 kb on - strand, within DVUA0065at 83.471 kb on + strand, within DVUA0065at 83.481 kb on + strand, within DVUA0065at 83.639 kb on - strand, within DVUA0065at 83.756 kb on - strand, within DVUA0065at 83.793 kb on + strand, within DVUA0065at 83.811 kb on - strand, within DVUA0065at 83.836 kb on - strand, within DVUA0065at 83.870 kb on + strand, within DVUA0065at 83.933 kb on + strand, within DVUA0065at 83.933 kb on + strand, within DVUA0065at 83.938 kb on + strand, within DVUA0065at 83.961 kb on - strand, within DVUA0065at 84.100 kb on + strand, within DVUA0065at 84.128 kb on + strand, within DVUA0065at 84.130 kb on + strand, within DVUA0065at 84.154 kb on - strand, within DVUA0065at 84.191 kb on + strand, within DVUA0065at 84.193 kb on + strand, within DVUA0065at 84.238 kb on - strand, within DVUA0065at 84.238 kb on - strand, within DVUA0065at 84.238 kb on - strand, within DVUA0065at 84.376 kb on + strand, within DVUA0065at 84.386 kb on - strand, within DVUA0065at 84.599 kb on + strand, within DVUA0065at 84.599 kb on + strand, within DVUA0065at 84.623 kb on + strand, within DVUA0065at 84.668 kb on + strand, within DVUA0065at 84.685 kb on + strand, within DVUA0065at 84.712 kb on + strand, within DVUA0065at 84.712 kb on + strand, within DVUA0065at 84.713 kb on - strand, within DVUA0065at 84.762 kb on + strandat 84.762 kb on + strandat 84.762 kb on + strandat 84.762 kb on + strandat 84.770 kb on - strandat 85.024 kb on - strandat 85.182 kb on + strandat 85.198 kb on - strandat 85.248 kb on + strandat 85.355 kb on - strandat 85.355 kb on - strandat 85.424 kb on - strandat 85.649 kb on - strand, within DVUA0066at 85.755 kb on + strand, within DVUA0066at 85.807 kb on + strand, within DVUA0066at 85.807 kb on - strand, within DVUA0066at 85.809 kb on + strand, within DVUA0066at 85.817 kb on - strand, within DVUA0066at 85.886 kb on - strand, within DVUA0066

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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81,938 - DVUA0064 0.45 -2.7
81,970 - DVUA0064 0.47 +0.6
82,022 + DVUA0064 0.50 -1.2
82,045 - DVUA0064 0.51 +2.1
82,066 - DVUA0064 0.52 +2.4
82,202 - DVUA0064 0.60 +0.6
82,436 + DVUA0064 0.74 +2.4
82,438 - DVUA0064 0.74 -1.1
82,457 + DVUA0064 0.75 -2.2
82,473 + DVUA0064 0.76 -0.8
82,475 + DVUA0064 0.76 +1.4
82,499 + DVUA0064 0.78 +3.7
82,529 + DVUA0064 0.79 +1.0
82,529 + DVUA0064 0.79 -1.8
82,531 + DVUA0064 0.79 -0.3
82,531 + DVUA0064 0.79 -0.7
82,719 - +1.4
82,816 + -0.6
82,878 + -1.2
82,920 - -1.2
83,055 - -1.6
83,123 - DVUA0065 0.12 -1.0
83,272 - DVUA0065 0.19 -0.5
83,435 + DVUA0065 0.27 +0.1
83,443 - DVUA0065 0.28 +1.0
83,443 - DVUA0065 0.28 -1.7
83,471 + DVUA0065 0.29 -1.6
83,481 + DVUA0065 0.29 -1.0
83,639 - DVUA0065 0.37 -0.1
83,756 - DVUA0065 0.43 -1.4
83,793 + DVUA0065 0.45 -0.9
83,811 - DVUA0065 0.46 -0.1
83,836 - DVUA0065 0.47 -1.0
83,870 + DVUA0065 0.49 -1.8
83,933 + DVUA0065 0.52 -0.5
83,933 + DVUA0065 0.52 -0.5
83,938 + DVUA0065 0.52 -3.4
83,961 - DVUA0065 0.53 -1.1
84,100 + DVUA0065 0.60 -0.9
84,128 + DVUA0065 0.61 +0.2
84,130 + DVUA0065 0.61 +0.8
84,154 - DVUA0065 0.62 -1.4
84,191 + DVUA0065 0.64 -2.2
84,193 + DVUA0065 0.64 -0.2
84,238 - DVUA0065 0.67 -1.0
84,238 - DVUA0065 0.67 -3.3
84,238 - DVUA0065 0.67 -0.9
84,376 + DVUA0065 0.73 +1.7
84,386 - DVUA0065 0.74 -0.6
84,599 + DVUA0065 0.84 -1.0
84,599 + DVUA0065 0.84 -1.2
84,623 + DVUA0065 0.85 -1.3
84,668 + DVUA0065 0.88 -0.1
84,685 + DVUA0065 0.89 -2.1
84,712 + DVUA0065 0.90 +1.4
84,712 + DVUA0065 0.90 -1.7
84,713 - DVUA0065 0.90 -1.0
84,762 + -1.1
84,762 + -1.0
84,762 + +1.4
84,762 + -0.8
84,770 - +0.1
85,024 - -1.5
85,182 + -0.8
85,198 - +2.4
85,248 + -2.3
85,355 - +0.8
85,355 - +0.3
85,424 - -1.4
85,649 - DVUA0066 0.20 +3.6
85,755 + DVUA0066 0.27 +0.4
85,807 + DVUA0066 0.31 +2.4
85,807 - DVUA0066 0.31 -2.3
85,809 + DVUA0066 0.31 -1.2
85,817 - DVUA0066 0.31 +2.4
85,886 - DVUA0066 0.36 -1.0

Or see this region's nucleotide sequence