Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0610 and DVU0611 are separated by 24 nucleotides DVU0611 and DVU0612 are separated by 15 nucleotides DVU0612 and DVU0614 are separated by 483 nucleotides DVU0614 and DVU0616 are separated by 179 nucleotides
DVU0610: DVU0610 - conserved hypothetical protein (TIGR), at 679,572 to 680,492
DVU0610
DVU0611: DVU0611 - ABC transporter, ATP-binding protein (TIGR), at 680,517 to 681,344
DVU0611
DVU0612: DVU0612 - STAS domain protein (TIGR), at 681,360 to 682,565
DVU0612
DVU0614: DVU0614 - hypothetical protein (TIGR), at 683,049 to 683,330
DVU0614
DVU0616: DVU0616 - hypothetical protein (TIGR), at 683,510 to 683,902
DVU0616
Position (kb) 681
682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 680.377 kb on - strand, within DVU0610 at 680.537 kb on + strand at 680.553 kb on + strand at 680.553 kb on + strand at 680.553 kb on + strand at 680.561 kb on - strand at 680.561 kb on - strand at 680.604 kb on - strand, within DVU0611 at 680.614 kb on + strand, within DVU0611 at 680.622 kb on - strand, within DVU0611 at 680.622 kb on - strand, within DVU0611 at 680.665 kb on - strand, within DVU0611 at 680.665 kb on - strand, within DVU0611 at 680.665 kb on - strand, within DVU0611 at 680.751 kb on - strand, within DVU0611 at 680.756 kb on - strand, within DVU0611 at 680.804 kb on + strand, within DVU0611 at 680.873 kb on - strand, within DVU0611 at 681.124 kb on - strand, within DVU0611 at 681.127 kb on + strand, within DVU0611 at 681.127 kb on + strand, within DVU0611 at 681.145 kb on - strand, within DVU0611 at 681.145 kb on - strand, within DVU0611 at 681.145 kb on - strand, within DVU0611 at 681.145 kb on - strand, within DVU0611 at 681.158 kb on - strand, within DVU0611 at 681.195 kb on - strand, within DVU0611 at 681.229 kb on + strand, within DVU0611 at 681.237 kb on - strand, within DVU0611 at 681.269 kb on - strand at 681.330 kb on + strand at 681.350 kb on + strand at 681.383 kb on - strand at 681.385 kb on + strand at 681.461 kb on + strand at 681.506 kb on - strand, within DVU0612 at 681.574 kb on - strand, within DVU0612 at 681.602 kb on + strand, within DVU0612 at 681.602 kb on + strand, within DVU0612 at 681.610 kb on - strand, within DVU0612 at 681.649 kb on + strand, within DVU0612 at 681.754 kb on + strand, within DVU0612 at 681.754 kb on + strand, within DVU0612 at 681.828 kb on - strand, within DVU0612 at 681.925 kb on - strand, within DVU0612 at 682.050 kb on - strand, within DVU0612 at 682.059 kb on - strand, within DVU0612 at 682.061 kb on + strand, within DVU0612 at 682.160 kb on - strand, within DVU0612 at 682.240 kb on - strand, within DVU0612 at 682.242 kb on + strand, within DVU0612 at 682.250 kb on - strand, within DVU0612 at 682.320 kb on - strand, within DVU0612 at 682.385 kb on - strand, within DVU0612 at 682.437 kb on + strand, within DVU0612 at 682.480 kb on - strand at 682.504 kb on - strand at 682.529 kb on + strand at 682.709 kb on + strand at 682.735 kb on + strand at 682.805 kb on + strand at 682.812 kb on + strand at 682.910 kb on + strand at 682.910 kb on + strand at 682.915 kb on + strand at 682.918 kb on - strand at 682.920 kb on + strand at 682.920 kb on + strand at 682.920 kb on + strand at 682.928 kb on - strand at 682.928 kb on - strand at 682.928 kb on - strand at 682.928 kb on - strand at 682.975 kb on + strand at 683.004 kb on + strand at 683.004 kb on + strand at 683.011 kb on + strand at 683.060 kb on - strand at 683.089 kb on - strand, within DVU0614 at 683.123 kb on - strand, within DVU0614 at 683.158 kb on + strand, within DVU0614 at 683.170 kb on + strand, within DVU0614 at 683.220 kb on + strand, within DVU0614 at 683.262 kb on + strand, within DVU0614 at 683.285 kb on - strand, within DVU0614 at 683.297 kb on - strand, within DVU0614 at 683.303 kb on - strand at 683.313 kb on - strand at 683.365 kb on + strand at 683.375 kb on + strand at 683.428 kb on - strand at 683.530 kb on + strand at 683.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 680,377 - DVU0610 0.87 -0.7 680,537 + -0.5 680,553 + +1.8 680,553 + -1.7 680,553 + +0.8 680,561 - +0.8 680,561 - +1.6 680,604 - DVU0611 0.11 -1.5 680,614 + DVU0611 0.12 -0.9 680,622 - DVU0611 0.13 -1.5 680,622 - DVU0611 0.13 -0.4 680,665 - DVU0611 0.18 -1.9 680,665 - DVU0611 0.18 +0.2 680,665 - DVU0611 0.18 -1.5 680,751 - DVU0611 0.28 +0.5 680,756 - DVU0611 0.29 -1.7 680,804 + DVU0611 0.35 -1.0 680,873 - DVU0611 0.43 -1.1 681,124 - DVU0611 0.73 +0.2 681,127 + DVU0611 0.74 -1.9 681,127 + DVU0611 0.74 +1.1 681,145 - DVU0611 0.76 -1.7 681,145 - DVU0611 0.76 -1.7 681,145 - DVU0611 0.76 -0.7 681,145 - DVU0611 0.76 -0.8 681,158 - DVU0611 0.77 -1.0 681,195 - DVU0611 0.82 -1.8 681,229 + DVU0611 0.86 -0.7 681,237 - DVU0611 0.87 +2.2 681,269 - +1.3 681,330 + +1.3 681,350 + -1.0 681,383 - -0.3 681,385 + -1.7 681,461 + -2.5 681,506 - DVU0612 0.12 -1.1 681,574 - DVU0612 0.18 -0.7 681,602 + DVU0612 0.20 +3.2 681,602 + DVU0612 0.20 +2.0 681,610 - DVU0612 0.21 +0.3 681,649 + DVU0612 0.24 +0.1 681,754 + DVU0612 0.33 +2.4 681,754 + DVU0612 0.33 +1.2 681,828 - DVU0612 0.39 +3.2 681,925 - DVU0612 0.47 +1.4 682,050 - DVU0612 0.57 +0.7 682,059 - DVU0612 0.58 +1.2 682,061 + DVU0612 0.58 +0.2 682,160 - DVU0612 0.66 +1.8 682,240 - DVU0612 0.73 +2.9 682,242 + DVU0612 0.73 -0.6 682,250 - DVU0612 0.74 +2.3 682,320 - DVU0612 0.80 +1.7 682,385 - DVU0612 0.85 -3.1 682,437 + DVU0612 0.89 -2.0 682,480 - -1.2 682,504 - +0.9 682,529 + -1.6 682,709 + +2.0 682,735 + +2.3 682,805 + -0.4 682,812 + -0.6 682,910 + +1.0 682,910 + -1.5 682,915 + -1.6 682,918 - -1.4 682,920 + +1.3 682,920 + -0.7 682,920 + -0.8 682,928 - +0.4 682,928 - -0.9 682,928 - -0.2 682,928 - -1.7 682,975 + -1.0 683,004 + +2.2 683,004 + -0.5 683,011 + -0.2 683,060 - +0.2 683,089 - DVU0614 0.14 -2.2 683,123 - DVU0614 0.26 +0.5 683,158 + DVU0614 0.39 -0.8 683,170 + DVU0614 0.43 +2.8 683,220 + DVU0614 0.61 -2.4 683,262 + DVU0614 0.76 -2.2 683,285 - DVU0614 0.84 -1.8 683,297 - DVU0614 0.88 -1.3 683,303 - -1.2 683,313 - -1.4 683,365 + -0.6 683,375 + +1.6 683,428 - +0.3 683,530 + -0.4 683,538 - +0.4
Or see this region's nucleotide sequence