Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0540 and DVU0542 are separated by 297 nucleotides DVU0542 and DVU0543 are separated by 21 nucleotides
DVU0540: DVU0540 - sensor histidine kinase (TIGR), at 611,436 to 613,847
DVU0540
DVU0542: DVU0542 - universal stress protein family (TIGR), at 614,145 to 614,567
DVU0542
DVU0543: DVU0543 - conserved hypothetical protein (TIGR), at 614,589 to 615,698
DVU0543
Position (kb) 614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 613.146 kb on - strand, within DVU0540 at 613.150 kb on + strand, within DVU0540 at 613.178 kb on - strand, within DVU0540 at 613.270 kb on + strand, within DVU0540 at 613.278 kb on - strand, within DVU0540 at 613.278 kb on - strand, within DVU0540 at 613.283 kb on - strand, within DVU0540 at 613.346 kb on + strand, within DVU0540 at 613.355 kb on - strand, within DVU0540 at 613.360 kb on + strand, within DVU0540 at 613.360 kb on + strand, within DVU0540 at 613.360 kb on + strand, within DVU0540 at 613.368 kb on - strand, within DVU0540 at 613.368 kb on - strand, within DVU0540 at 613.405 kb on - strand, within DVU0540 at 613.415 kb on - strand, within DVU0540 at 613.420 kb on - strand, within DVU0540 at 613.423 kb on + strand, within DVU0540 at 613.423 kb on + strand, within DVU0540 at 613.423 kb on + strand, within DVU0540 at 613.423 kb on + strand, within DVU0540 at 613.459 kb on - strand, within DVU0540 at 613.537 kb on + strand, within DVU0540 at 613.636 kb on + strand at 613.641 kb on + strand at 613.649 kb on - strand at 613.686 kb on - strand at 613.689 kb on + strand at 613.689 kb on + strand at 613.743 kb on - strand at 613.868 kb on + strand at 613.886 kb on + strand at 613.886 kb on + strand at 613.896 kb on - strand at 613.911 kb on - strand at 613.969 kb on + strand at 614.191 kb on - strand, within DVU0542 at 614.198 kb on - strand, within DVU0542 at 614.198 kb on - strand, within DVU0542 at 614.376 kb on + strand, within DVU0542 at 614.412 kb on + strand, within DVU0542 at 614.667 kb on - strand at 614.841 kb on - strand, within DVU0543 at 614.855 kb on + strand, within DVU0543 at 614.863 kb on - strand, within DVU0543 at 614.866 kb on + strand, within DVU0543 at 615.029 kb on + strand, within DVU0543 at 615.070 kb on + strand, within DVU0543 at 615.105 kb on - strand, within DVU0543 at 615.115 kb on - strand, within DVU0543 at 615.127 kb on + strand, within DVU0543 at 615.278 kb on + strand, within DVU0543 at 615.362 kb on + strand, within DVU0543 at 615.443 kb on - strand, within DVU0543 at 615.484 kb on + strand, within DVU0543 at 615.484 kb on + strand, within DVU0543 at 615.484 kb on + strand, within DVU0543 at 615.494 kb on + strand, within DVU0543 at 615.517 kb on - strand, within DVU0543 at 615.530 kb on - strand, within DVU0543 at 615.546 kb on + strand, within DVU0543
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 613,146 - DVU0540 0.71 -1.6 613,150 + DVU0540 0.71 -1.2 613,178 - DVU0540 0.72 -1.5 613,270 + DVU0540 0.76 -0.5 613,278 - DVU0540 0.76 -1.7 613,278 - DVU0540 0.76 -1.3 613,283 - DVU0540 0.77 +3.7 613,346 + DVU0540 0.79 -1.2 613,355 - DVU0540 0.80 -1.7 613,360 + DVU0540 0.80 -1.2 613,360 + DVU0540 0.80 -1.4 613,360 + DVU0540 0.80 -0.4 613,368 - DVU0540 0.80 +1.3 613,368 - DVU0540 0.80 +1.7 613,405 - DVU0540 0.82 -1.5 613,415 - DVU0540 0.82 -0.2 613,420 - DVU0540 0.82 -2.4 613,423 + DVU0540 0.82 +0.9 613,423 + DVU0540 0.82 -0.9 613,423 + DVU0540 0.82 -1.1 613,423 + DVU0540 0.82 +2.7 613,459 - DVU0540 0.84 -2.1 613,537 + DVU0540 0.87 -2.2 613,636 + +0.4 613,641 + +0.2 613,649 - -2.0 613,686 - -0.5 613,689 + +0.4 613,689 + -1.7 613,743 - -1.1 613,868 + -1.2 613,886 + -1.3 613,886 + -1.5 613,896 - +0.5 613,911 - +1.0 613,969 + -0.2 614,191 - DVU0542 0.11 -1.7 614,198 - DVU0542 0.13 -2.4 614,198 - DVU0542 0.13 -0.7 614,376 + DVU0542 0.55 +0.1 614,412 + DVU0542 0.63 -1.4 614,667 - -1.4 614,841 - DVU0543 0.23 -0.4 614,855 + DVU0543 0.24 -2.8 614,863 - DVU0543 0.25 -0.0 614,866 + DVU0543 0.25 +2.0 615,029 + DVU0543 0.40 -1.5 615,070 + DVU0543 0.43 -0.3 615,105 - DVU0543 0.46 -1.4 615,115 - DVU0543 0.47 -1.4 615,127 + DVU0543 0.48 -1.8 615,278 + DVU0543 0.62 -1.4 615,362 + DVU0543 0.70 -0.4 615,443 - DVU0543 0.77 -0.7 615,484 + DVU0543 0.81 -2.6 615,484 + DVU0543 0.81 -0.7 615,484 + DVU0543 0.81 -0.1 615,494 + DVU0543 0.82 -0.9 615,517 - DVU0543 0.84 +2.1 615,530 - DVU0543 0.85 -0.3 615,546 + DVU0543 0.86 -1.2
Or see this region's nucleotide sequence