Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0362

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntilvB-1 and ilvH are separated by 4 nucleotidesilvH and DVU0362 are separated by 50 nucleotidesDVU0362 and pabB overlap by 4 nucleotides DVU0360: ilvB-1 - acetolactate synthase, large subunit, biosynthetic type (TIGR), at 409,391 to 411,082 ilvB-1 DVU0361: ilvH - acetolactate synthase III, small subunit, putative (TIGR), at 411,087 to 411,410 ilvH DVU0362: DVU0362 - conserved hypothetical protein (TIGR), at 411,461 to 412,240 DVU0362 DVU0363: pabB - para-aminobenzoate synthase, component I (TIGR), at 412,237 to 413,241 pabB Position (kb) 411 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 410.485 kb on - strand, within ilvB-1at 410.549 kb on + strand, within ilvB-1at 410.564 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.572 kb on - strand, within ilvB-1at 410.572 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.612 kb on - strand, within ilvB-1at 410.657 kb on + strand, within ilvB-1at 410.666 kb on + strand, within ilvB-1at 410.670 kb on - strand, within ilvB-1at 410.670 kb on - strand, within ilvB-1at 410.682 kb on - strand, within ilvB-1at 410.786 kb on + strand, within ilvB-1at 410.787 kb on + strand, within ilvB-1at 410.787 kb on - strand, within ilvB-1at 410.793 kb on + strand, within ilvB-1at 410.801 kb on - strand, within ilvB-1at 410.966 kb on - strandat 410.972 kb on - strandat 411.012 kb on - strandat 411.094 kb on + strandat 411.097 kb on - strandat 411.175 kb on - strand, within ilvHat 411.373 kb on + strand, within ilvHat 411.389 kb on - strandat 411.409 kb on + strandat 411.532 kb on - strandat 411.565 kb on - strand, within DVU0362at 411.626 kb on - strand, within DVU0362at 411.626 kb on - strand, within DVU0362at 411.631 kb on - strand, within DVU0362at 411.642 kb on + strand, within DVU0362at 411.649 kb on - strand, within DVU0362at 411.683 kb on - strand, within DVU0362at 411.708 kb on - strand, within DVU0362at 411.727 kb on - strand, within DVU0362at 411.915 kb on + strand, within DVU0362at 411.938 kb on + strand, within DVU0362at 411.996 kb on - strand, within DVU0362at 412.062 kb on - strand, within DVU0362at 412.093 kb on - strand, within DVU0362at 412.134 kb on + strand, within DVU0362at 412.146 kb on + strand, within DVU0362at 412.344 kb on + strand, within pabBat 412.360 kb on + strand, within pabBat 412.360 kb on + strand, within pabBat 412.368 kb on - strand, within pabBat 412.368 kb on - strand, within pabBat 412.485 kb on + strand, within pabBat 412.493 kb on - strand, within pabBat 412.503 kb on - strand, within pabBat 412.528 kb on - strand, within pabBat 412.590 kb on - strand, within pabBat 412.602 kb on + strand, within pabBat 412.664 kb on + strand, within pabBat 412.738 kb on + strand, within pabBat 412.738 kb on - strand, within pabBat 412.770 kb on + strand, within pabBat 412.778 kb on - strand, within pabBat 412.778 kb on - strand, within pabBat 412.787 kb on + strand, within pabBat 412.828 kb on + strand, within pabBat 412.834 kb on - strand, within pabBat 412.901 kb on - strand, within pabBat 412.980 kb on + strand, within pabBat 412.983 kb on - strand, within pabBat 412.996 kb on - strand, within pabBat 412.996 kb on - strand, within pabBat 413.002 kb on + strand, within pabBat 413.019 kb on + strand, within pabBat 413.027 kb on - strand, within pabBat 413.094 kb on - strand, within pabBat 413.097 kb on + strand, within pabBat 413.128 kb on + strand, within pabBat 413.205 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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410,485 - ilvB-1 DVU0360 0.65 -1.0
410,549 + ilvB-1 DVU0360 0.68 -0.3
410,564 + ilvB-1 DVU0360 0.69 -0.2
410,569 + ilvB-1 DVU0360 0.70 -2.0
410,569 + ilvB-1 DVU0360 0.70 +1.4
410,569 + ilvB-1 DVU0360 0.70 +0.9
410,569 + ilvB-1 DVU0360 0.70 +0.8
410,569 + ilvB-1 DVU0360 0.70 -1.2
410,569 + ilvB-1 DVU0360 0.70 -0.2
410,569 + ilvB-1 DVU0360 0.70 -1.6
410,569 + ilvB-1 DVU0360 0.70 -1.1
410,569 + ilvB-1 DVU0360 0.70 -0.4
410,569 + ilvB-1 DVU0360 0.70 +3.6
410,569 + ilvB-1 DVU0360 0.70 +0.1
410,569 + ilvB-1 DVU0360 0.70 +0.2
410,569 + ilvB-1 DVU0360 0.70 +2.0
410,569 + ilvB-1 DVU0360 0.70 -1.9
410,572 - ilvB-1 DVU0360 0.70 +0.0
410,572 - ilvB-1 DVU0360 0.70 -1.0
410,577 - ilvB-1 DVU0360 0.70 -0.5
410,577 - ilvB-1 DVU0360 0.70 -1.3
410,577 - ilvB-1 DVU0360 0.70 -0.0
410,577 - ilvB-1 DVU0360 0.70 +0.5
410,577 - ilvB-1 DVU0360 0.70 -0.4
410,577 - ilvB-1 DVU0360 0.70 -2.2
410,577 - ilvB-1 DVU0360 0.70 -1.2
410,577 - ilvB-1 DVU0360 0.70 -2.8
410,577 - ilvB-1 DVU0360 0.70 +0.0
410,577 - ilvB-1 DVU0360 0.70 -0.1
410,577 - ilvB-1 DVU0360 0.70 +4.6
410,577 - ilvB-1 DVU0360 0.70 -1.3
410,577 - ilvB-1 DVU0360 0.70 -0.8
410,577 - ilvB-1 DVU0360 0.70 -0.0
410,612 - ilvB-1 DVU0360 0.72 +0.2
410,657 + ilvB-1 DVU0360 0.75 -1.1
410,666 + ilvB-1 DVU0360 0.75 +1.3
410,670 - ilvB-1 DVU0360 0.76 -0.4
410,670 - ilvB-1 DVU0360 0.76 -1.1
410,682 - ilvB-1 DVU0360 0.76 +1.5
410,786 + ilvB-1 DVU0360 0.82 +0.2
410,787 + ilvB-1 DVU0360 0.83 -0.5
410,787 - ilvB-1 DVU0360 0.83 +0.4
410,793 + ilvB-1 DVU0360 0.83 +0.5
410,801 - ilvB-1 DVU0360 0.83 -1.1
410,966 - -0.0
410,972 - -1.5
411,012 - +2.0
411,094 + -0.9
411,097 - -1.8
411,175 - ilvH DVU0361 0.27 -0.6
411,373 + ilvH DVU0361 0.88 -0.6
411,389 - +1.1
411,409 + -1.2
411,532 - -0.3
411,565 - DVU0362 0.13 +0.9
411,626 - DVU0362 0.21 -2.0
411,626 - DVU0362 0.21 -0.1
411,631 - DVU0362 0.22 -2.0
411,642 + DVU0362 0.23 -0.4
411,649 - DVU0362 0.24 -1.8
411,683 - DVU0362 0.28 -0.4
411,708 - DVU0362 0.32 -2.4
411,727 - DVU0362 0.34 -1.3
411,915 + DVU0362 0.58 -1.4
411,938 + DVU0362 0.61 +0.2
411,996 - DVU0362 0.69 -2.0
412,062 - DVU0362 0.77 -0.7
412,093 - DVU0362 0.81 -1.6
412,134 + DVU0362 0.86 +1.8
412,146 + DVU0362 0.88 +2.6
412,344 + pabB DVU0363 0.11 +2.4
412,360 + pabB DVU0363 0.12 +0.4
412,360 + pabB DVU0363 0.12 -1.1
412,368 - pabB DVU0363 0.13 -1.0
412,368 - pabB DVU0363 0.13 -1.2
412,485 + pabB DVU0363 0.25 +2.6
412,493 - pabB DVU0363 0.25 -2.1
412,503 - pabB DVU0363 0.26 -1.8
412,528 - pabB DVU0363 0.29 -1.3
412,590 - pabB DVU0363 0.35 +0.3
412,602 + pabB DVU0363 0.36 -2.1
412,664 + pabB DVU0363 0.42 -1.0
412,738 + pabB DVU0363 0.50 -0.9
412,738 - pabB DVU0363 0.50 -0.9
412,770 + pabB DVU0363 0.53 +0.7
412,778 - pabB DVU0363 0.54 -2.9
412,778 - pabB DVU0363 0.54 -0.4
412,787 + pabB DVU0363 0.55 -1.5
412,828 + pabB DVU0363 0.59 -1.6
412,834 - pabB DVU0363 0.59 +2.0
412,901 - pabB DVU0363 0.66 -1.3
412,980 + pabB DVU0363 0.74 -1.1
412,983 - pabB DVU0363 0.74 +0.7
412,996 - pabB DVU0363 0.76 -1.3
412,996 - pabB DVU0363 0.76 -1.1
413,002 + pabB DVU0363 0.76 -0.7
413,019 + pabB DVU0363 0.78 +0.8
413,027 - pabB DVU0363 0.79 +1.2
413,094 - pabB DVU0363 0.85 -0.7
413,097 + pabB DVU0363 0.86 +0.3
413,128 + pabB DVU0363 0.89 +2.4
413,205 + -0.1

Or see this region's nucleotide sequence