Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0236

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0234 and DVU0235 are separated by 2 nucleotidesDVU0235 and DORF26459 are separated by 97 nucleotidesDORF26459 and DVU0236 overlap by 4 nucleotidesDVU0236 and tRNA-Lys are separated by 106 nucleotidestRNA-Lys and serS are separated by 58 nucleotides DVU0234: DVU0234 - hypothetical protein (TIGR), at 267,982 to 268,305 DVU0234 DVU0235: DVU0235 - hypothetical protein (TIGR), at 268,308 to 268,871 DVU0235 DORF26459: DORF26459 - no description, at 268,969 to 269,286 DORF26459 DVU0236: DVU0236 - site-specific recombinase, phage integrase family (TIGR), at 269,283 to 270,425 DVU0236 DVU_tRNA-Lys-1: tRNA-Lys - tRNA with anticodon TTT for Lys (VIMSS-AUTO), at 270,532 to 270,607 tRNA-Lys DVU0237: serS - seryl-tRNA synthetase (TIGR), at 270,666 to 271,940 serS Position (kb) 269 270 271Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 268.317 kb on - strandat 268.378 kb on - strand, within DVU0235at 268.397 kb on - strand, within DVU0235at 268.407 kb on - strand, within DVU0235at 268.422 kb on + strand, within DVU0235at 268.478 kb on + strand, within DVU0235at 268.486 kb on - strand, within DVU0235at 268.486 kb on - strand, within DVU0235at 268.556 kb on - strand, within DVU0235at 268.654 kb on - strand, within DVU0235at 268.661 kb on + strand, within DVU0235at 268.699 kb on + strand, within DVU0235at 268.701 kb on + strand, within DVU0235at 268.701 kb on + strand, within DVU0235at 268.709 kb on - strand, within DVU0235at 268.709 kb on - strand, within DVU0235at 268.709 kb on - strand, within DVU0235at 268.714 kb on - strand, within DVU0235at 268.762 kb on + strand, within DVU0235at 268.779 kb on + strand, within DVU0235at 268.779 kb on + strand, within DVU0235at 268.779 kb on + strand, within DVU0235at 268.787 kb on - strand, within DVU0235at 268.787 kb on - strand, within DVU0235at 268.793 kb on + strand, within DVU0235at 268.803 kb on + strand, within DVU0235at 268.822 kb on - strandat 268.872 kb on + strandat 268.898 kb on + strandat 268.930 kb on + strandat 268.948 kb on + strandat 268.948 kb on + strandat 268.956 kb on - strandat 268.956 kb on - strandat 268.976 kb on + strandat 269.060 kb on - strand, within DORF26459at 269.074 kb on + strand, within DORF26459at 269.074 kb on + strand, within DORF26459at 269.093 kb on + strand, within DORF26459at 269.147 kb on + strand, within DORF26459at 269.155 kb on - strand, within DORF26459at 269.189 kb on - strand, within DORF26459at 269.194 kb on - strand, within DORF26459at 269.260 kb on - strandat 269.304 kb on - strandat 269.355 kb on - strandat 269.372 kb on - strandat 269.372 kb on - strandat 269.372 kb on - strandat 269.377 kb on - strandat 269.429 kb on - strand, within DVU0236at 269.465 kb on - strand, within DVU0236at 269.513 kb on + strand, within DVU0236at 269.551 kb on + strand, within DVU0236at 269.575 kb on + strand, within DVU0236at 269.583 kb on + strand, within DVU0236at 269.591 kb on - strand, within DVU0236at 269.591 kb on - strand, within DVU0236at 269.605 kb on + strand, within DVU0236at 269.613 kb on - strand, within DVU0236at 269.644 kb on + strand, within DVU0236at 269.708 kb on + strand, within DVU0236at 269.709 kb on + strand, within DVU0236at 269.709 kb on + strand, within DVU0236at 269.709 kb on + strand, within DVU0236at 269.709 kb on + strand, within DVU0236at 269.709 kb on - strand, within DVU0236at 269.710 kb on - strand, within DVU0236at 269.717 kb on - strand, within DVU0236at 269.717 kb on - strand, within DVU0236at 269.731 kb on - strand, within DVU0236at 269.742 kb on + strand, within DVU0236at 269.750 kb on - strand, within DVU0236at 269.792 kb on - strand, within DVU0236at 269.794 kb on - strand, within DVU0236at 269.796 kb on + strand, within DVU0236at 269.826 kb on - strand, within DVU0236at 269.826 kb on - strand, within DVU0236at 269.826 kb on - strand, within DVU0236at 269.922 kb on - strand, within DVU0236at 269.922 kb on - strand, within DVU0236at 269.925 kb on - strand, within DVU0236at 269.925 kb on - strand, within DVU0236at 269.943 kb on + strand, within DVU0236at 269.957 kb on + strand, within DVU0236at 270.013 kb on + strand, within DVU0236at 270.057 kb on - strand, within DVU0236at 270.062 kb on - strand, within DVU0236at 270.118 kb on + strand, within DVU0236at 270.120 kb on + strand, within DVU0236at 270.130 kb on + strand, within DVU0236at 270.138 kb on - strand, within DVU0236at 270.164 kb on + strand, within DVU0236at 270.180 kb on - strand, within DVU0236at 270.187 kb on - strand, within DVU0236at 270.203 kb on - strand, within DVU0236at 270.232 kb on + strand, within DVU0236at 270.294 kb on + strand, within DVU0236at 270.386 kb on - strandat 270.393 kb on - strandat 270.393 kb on - strandat 270.422 kb on - strandat 270.652 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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268,317 - -0.6
268,378 - DVU0235 0.12 +0.3
268,397 - DVU0235 0.16 -2.0
268,407 - DVU0235 0.18 -1.8
268,422 + DVU0235 0.20 +0.6
268,478 + DVU0235 0.30 -0.1
268,486 - DVU0235 0.32 -1.5
268,486 - DVU0235 0.32 -1.6
268,556 - DVU0235 0.44 +1.4
268,654 - DVU0235 0.61 +0.2
268,661 + DVU0235 0.63 -0.8
268,699 + DVU0235 0.69 -0.2
268,701 + DVU0235 0.70 -1.3
268,701 + DVU0235 0.70 +0.2
268,709 - DVU0235 0.71 +1.6
268,709 - DVU0235 0.71 -1.0
268,709 - DVU0235 0.71 +0.1
268,714 - DVU0235 0.72 +1.6
268,762 + DVU0235 0.80 -1.2
268,779 + DVU0235 0.84 +3.0
268,779 + DVU0235 0.84 +2.6
268,779 + DVU0235 0.84 +0.5
268,787 - DVU0235 0.85 -1.9
268,787 - DVU0235 0.85 +0.6
268,793 + DVU0235 0.86 -0.1
268,803 + DVU0235 0.88 -2.4
268,822 - -1.8
268,872 + +1.0
268,898 + +0.7
268,930 + +2.3
268,948 + -0.9
268,948 + -1.6
268,956 - -0.4
268,956 - -0.4
268,976 + -0.2
269,060 - DORF26459 0.29 +0.6
269,074 + DORF26459 0.33 +1.0
269,074 + DORF26459 0.33 +1.4
269,093 + DORF26459 0.39 +0.6
269,147 + DORF26459 0.56 +4.6
269,155 - DORF26459 0.58 +0.9
269,189 - DORF26459 0.69 -0.7
269,194 - DORF26459 0.71 +0.5
269,260 - -0.5
269,304 - -1.4
269,355 - +1.6
269,372 - +0.5
269,372 - -1.6
269,372 - +2.3
269,377 - +1.3
269,429 - DVU0236 0.13 +1.6
269,465 - DVU0236 0.16 -0.3
269,513 + DVU0236 0.20 -2.3
269,551 + DVU0236 0.23 -1.4
269,575 + DVU0236 0.26 -2.8
269,583 + DVU0236 0.26 +1.1
269,591 - DVU0236 0.27 +0.0
269,591 - DVU0236 0.27 -1.6
269,605 + DVU0236 0.28 -1.7
269,613 - DVU0236 0.29 -2.5
269,644 + DVU0236 0.32 +1.3
269,708 + DVU0236 0.37 -1.3
269,709 + DVU0236 0.37 +2.6
269,709 + DVU0236 0.37 -0.4
269,709 + DVU0236 0.37 +1.0
269,709 + DVU0236 0.37 -2.4
269,709 - DVU0236 0.37 -0.5
269,710 - DVU0236 0.37 -1.1
269,717 - DVU0236 0.38 -1.8
269,717 - DVU0236 0.38 +3.6
269,731 - DVU0236 0.39 -0.7
269,742 + DVU0236 0.40 +2.6
269,750 - DVU0236 0.41 -1.2
269,792 - DVU0236 0.45 +1.8
269,794 - DVU0236 0.45 -1.6
269,796 + DVU0236 0.45 -1.6
269,826 - DVU0236 0.48 +0.7
269,826 - DVU0236 0.48 -0.3
269,826 - DVU0236 0.48 +1.2
269,922 - DVU0236 0.56 -1.3
269,922 - DVU0236 0.56 -1.5
269,925 - DVU0236 0.56 -2.1
269,925 - DVU0236 0.56 +0.9
269,943 + DVU0236 0.58 -1.1
269,957 + DVU0236 0.59 +1.3
270,013 + DVU0236 0.64 +0.1
270,057 - DVU0236 0.68 -0.5
270,062 - DVU0236 0.68 +0.3
270,118 + DVU0236 0.73 -1.3
270,120 + DVU0236 0.73 -1.2
270,130 + DVU0236 0.74 +2.0
270,138 - DVU0236 0.75 -1.7
270,164 + DVU0236 0.77 +1.6
270,180 - DVU0236 0.78 -1.1
270,187 - DVU0236 0.79 -1.3
270,203 - DVU0236 0.80 -1.0
270,232 + DVU0236 0.83 +1.2
270,294 + DVU0236 0.88 +1.4
270,386 - -2.2
270,393 - -0.2
270,393 - +1.6
270,422 - +1.8
270,652 + +1.6

Or see this region's nucleotide sequence