Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0102 and fepC are separated by 32 nucleotides fepC and DVU0104 are separated by 8 nucleotides
DVU0102: DVU0102 - cation ABC transporter, periplasmic binding protein (TIGR), at 135,121 to 136,113
DVU0102
DVU0103: fepC - cation ABC transporter, ATP-binding protein, putative (TIGR), at 136,146 to 137,087
fepC
DVU0104: DVU0104 - cation ABC transporter, permease protein, putative (TIGR), at 137,096 to 137,932
DVU0104
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 135.180 kb on - strand at 135.208 kb on - strand at 135.245 kb on - strand, within DVU0102 at 135.255 kb on + strand, within DVU0102 at 135.272 kb on - strand, within DVU0102 at 135.300 kb on - strand, within DVU0102 at 135.340 kb on - strand, within DVU0102 at 135.391 kb on + strand, within DVU0102 at 135.391 kb on + strand, within DVU0102 at 135.391 kb on + strand, within DVU0102 at 135.399 kb on - strand, within DVU0102 at 135.447 kb on + strand, within DVU0102 at 135.553 kb on - strand, within DVU0102 at 135.576 kb on + strand, within DVU0102 at 135.576 kb on + strand, within DVU0102 at 135.606 kb on - strand, within DVU0102 at 135.633 kb on + strand, within DVU0102 at 135.647 kb on + strand, within DVU0102 at 135.710 kb on - strand, within DVU0102 at 135.742 kb on - strand, within DVU0102 at 135.742 kb on - strand, within DVU0102 at 135.785 kb on - strand, within DVU0102 at 135.827 kb on + strand, within DVU0102 at 135.827 kb on + strand, within DVU0102 at 135.866 kb on + strand, within DVU0102 at 135.866 kb on + strand, within DVU0102 at 135.910 kb on - strand, within DVU0102 at 136.107 kb on + strand at 136.145 kb on + strand at 136.305 kb on + strand, within fepC at 136.364 kb on + strand, within fepC at 136.466 kb on - strand, within fepC at 136.480 kb on + strand, within fepC at 136.488 kb on - strand, within fepC at 136.497 kb on - strand, within fepC at 136.558 kb on - strand, within fepC at 136.732 kb on + strand, within fepC at 136.733 kb on - strand, within fepC at 136.847 kb on + strand, within fepC at 136.847 kb on + strand, within fepC at 136.847 kb on + strand, within fepC at 136.881 kb on + strand, within fepC at 136.920 kb on + strand, within fepC at 136.953 kb on - strand, within fepC at 136.955 kb on + strand, within fepC at 136.960 kb on + strand, within fepC at 136.990 kb on - strand, within fepC at 136.990 kb on - strand, within fepC at 137.081 kb on + strand at 137.129 kb on + strand at 137.148 kb on - strand at 137.190 kb on - strand, within DVU0104 at 137.286 kb on + strand, within DVU0104 at 137.453 kb on - strand, within DVU0104 at 137.455 kb on + strand, within DVU0104 at 137.467 kb on + strand, within DVU0104 at 137.500 kb on + strand, within DVU0104 at 137.545 kb on + strand, within DVU0104 at 137.617 kb on + strand, within DVU0104 at 137.625 kb on - strand, within DVU0104 at 137.625 kb on - strand, within DVU0104 at 137.625 kb on - strand, within DVU0104 at 137.644 kb on + strand, within DVU0104 at 137.686 kb on + strand, within DVU0104 at 137.694 kb on - strand, within DVU0104 at 137.801 kb on - strand, within DVU0104 at 137.881 kb on + strand at 137.896 kb on + strand at 137.896 kb on + strand at 138.062 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 135,180 - +1.1 135,208 - -0.2 135,245 - DVU0102 0.12 +3.6 135,255 + DVU0102 0.13 +1.3 135,272 - DVU0102 0.15 -0.9 135,300 - DVU0102 0.18 -1.2 135,340 - DVU0102 0.22 -1.7 135,391 + DVU0102 0.27 -0.8 135,391 + DVU0102 0.27 +0.7 135,391 + DVU0102 0.27 -2.0 135,399 - DVU0102 0.28 -1.1 135,447 + DVU0102 0.33 -1.5 135,553 - DVU0102 0.44 +1.8 135,576 + DVU0102 0.46 -0.6 135,576 + DVU0102 0.46 -2.2 135,606 - DVU0102 0.49 -2.0 135,633 + DVU0102 0.52 +0.5 135,647 + DVU0102 0.53 -0.6 135,710 - DVU0102 0.59 -0.2 135,742 - DVU0102 0.63 -1.3 135,742 - DVU0102 0.63 -0.9 135,785 - DVU0102 0.67 +3.6 135,827 + DVU0102 0.71 -2.5 135,827 + DVU0102 0.71 +0.8 135,866 + DVU0102 0.75 -1.9 135,866 + DVU0102 0.75 +1.6 135,910 - DVU0102 0.79 +1.1 136,107 + +0.8 136,145 + -0.8 136,305 + fepC DVU0103 0.17 -0.1 136,364 + fepC DVU0103 0.23 -2.9 136,466 - fepC DVU0103 0.34 -1.5 136,480 + fepC DVU0103 0.35 -3.4 136,488 - fepC DVU0103 0.36 -1.4 136,497 - fepC DVU0103 0.37 -0.9 136,558 - fepC DVU0103 0.44 -1.8 136,732 + fepC DVU0103 0.62 -2.1 136,733 - fepC DVU0103 0.62 +1.0 136,847 + fepC DVU0103 0.74 -0.7 136,847 + fepC DVU0103 0.74 +2.0 136,847 + fepC DVU0103 0.74 -2.2 136,881 + fepC DVU0103 0.78 +3.2 136,920 + fepC DVU0103 0.82 +0.9 136,953 - fepC DVU0103 0.86 +0.9 136,955 + fepC DVU0103 0.86 -1.5 136,960 + fepC DVU0103 0.86 -1.6 136,990 - fepC DVU0103 0.90 -1.0 136,990 - fepC DVU0103 0.90 -1.4 137,081 + -1.2 137,129 + -0.7 137,148 - -1.3 137,190 - DVU0104 0.11 +0.1 137,286 + DVU0104 0.23 -0.5 137,453 - DVU0104 0.43 +0.0 137,455 + DVU0104 0.43 +2.5 137,467 + DVU0104 0.44 +2.6 137,500 + DVU0104 0.48 +0.3 137,545 + DVU0104 0.54 +0.2 137,617 + DVU0104 0.62 +1.7 137,625 - DVU0104 0.63 +2.4 137,625 - DVU0104 0.63 +0.0 137,625 - DVU0104 0.63 -2.6 137,644 + DVU0104 0.65 +0.1 137,686 + DVU0104 0.70 +0.4 137,694 - DVU0104 0.71 +0.6 137,801 - DVU0104 0.84 +1.2 137,881 + -1.1 137,896 + +3.1 137,896 + -1.3 138,062 + +0.2
Or see this region's nucleotide sequence