Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gufA and fumC are separated by 37 nucleotides fumC and DVU0081 are separated by 152 nucleotides
DVU0079: gufA - ZIP zinc transporter family protein (TIGR), at 96,159 to 96,962
gufA
DVU0080: fumC - fumarate hydratase, class II (TIGR), at 97,000 to 98,406
fumC
DVU0081: DVU0081 - sensory box histidine kinase/response regulator (TIGR), at 98,559 to 100,289
DVU0081
Position (kb) 96
97
98
99 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 96.004 kb on + strand at 96.004 kb on + strand at 96.035 kb on - strand at 96.076 kb on + strand at 96.081 kb on + strand at 96.089 kb on - strand at 96.092 kb on + strand at 96.092 kb on + strand at 96.100 kb on - strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.110 kb on - strand at 96.110 kb on - strand at 96.110 kb on - strand at 96.110 kb on - strand at 96.202 kb on + strand at 96.221 kb on + strand at 96.221 kb on + strand at 96.221 kb on + strand at 96.221 kb on + strand at 96.229 kb on - strand at 96.229 kb on - strand at 96.231 kb on + strand at 96.243 kb on + strand, within gufA at 96.251 kb on - strand, within gufA at 96.251 kb on - strand, within gufA at 96.291 kb on + strand, within gufA at 96.354 kb on - strand, within gufA at 96.371 kb on + strand, within gufA at 96.399 kb on - strand, within gufA at 96.464 kb on - strand, within gufA at 96.549 kb on + strand, within gufA at 96.599 kb on + strand, within gufA at 96.611 kb on + strand, within gufA at 96.611 kb on + strand, within gufA at 96.638 kb on + strand, within gufA at 96.638 kb on + strand, within gufA at 96.646 kb on - strand, within gufA at 96.656 kb on - strand, within gufA at 96.679 kb on + strand, within gufA at 96.703 kb on - strand, within gufA at 96.747 kb on + strand, within gufA at 96.787 kb on + strand, within gufA at 96.806 kb on + strand, within gufA at 96.807 kb on + strand, within gufA at 96.821 kb on - strand, within gufA at 96.858 kb on - strand, within gufA at 96.886 kb on - strand at 96.912 kb on - strand at 96.966 kb on - strand at 97.053 kb on - strand at 97.073 kb on - strand at 97.145 kb on + strand, within fumC at 97.155 kb on + strand, within fumC at 97.155 kb on + strand, within fumC at 97.163 kb on - strand, within fumC at 97.163 kb on - strand, within fumC at 97.184 kb on - strand, within fumC at 97.280 kb on + strand, within fumC at 97.303 kb on + strand, within fumC at 97.335 kb on + strand, within fumC at 97.362 kb on - strand, within fumC at 97.364 kb on - strand, within fumC at 97.364 kb on - strand, within fumC at 97.364 kb on - strand, within fumC at 97.392 kb on + strand, within fumC at 97.478 kb on + strand, within fumC at 97.478 kb on + strand, within fumC at 97.543 kb on + strand, within fumC at 97.586 kb on + strand, within fumC at 97.671 kb on - strand, within fumC at 97.702 kb on - strand, within fumC at 97.720 kb on + strand, within fumC at 97.759 kb on + strand, within fumC at 97.788 kb on + strand, within fumC at 97.824 kb on - strand, within fumC at 97.828 kb on - strand, within fumC at 97.838 kb on + strand, within fumC at 97.935 kb on - strand, within fumC at 97.982 kb on + strand, within fumC at 97.985 kb on - strand, within fumC at 97.990 kb on - strand, within fumC at 97.990 kb on - strand, within fumC at 97.994 kb on + strand, within fumC at 97.999 kb on + strand, within fumC at 97.999 kb on + strand, within fumC at 98.007 kb on - strand, within fumC at 98.007 kb on - strand, within fumC at 98.022 kb on + strand, within fumC at 98.029 kb on + strand, within fumC at 98.030 kb on - strand, within fumC at 98.030 kb on - strand, within fumC at 98.034 kb on + strand, within fumC at 98.037 kb on - strand, within fumC at 98.147 kb on - strand, within fumC at 98.229 kb on + strand, within fumC at 98.236 kb on + strand, within fumC at 98.237 kb on - strand, within fumC at 98.254 kb on + strand, within fumC at 98.327 kb on + strand at 98.350 kb on + strand at 98.358 kb on - strand at 98.358 kb on - strand at 98.364 kb on + strand at 98.369 kb on + strand at 98.369 kb on + strand at 98.396 kb on + strand at 98.408 kb on - strand at 98.419 kb on + strand at 98.419 kb on + strand at 98.434 kb on + strand at 98.436 kb on + strand at 98.446 kb on + strand at 98.454 kb on - strand at 98.491 kb on - strand at 98.506 kb on - strand at 98.529 kb on + strand at 98.545 kb on - strand at 98.551 kb on - strand at 98.553 kb on - strand at 98.563 kb on - strand at 98.700 kb on - strand at 98.713 kb on - strand at 98.729 kb on - strand at 98.751 kb on - strand, within DVU0081 at 98.788 kb on - strand, within DVU0081 at 98.809 kb on - strand, within DVU0081 at 98.891 kb on - strand, within DVU0081 at 98.901 kb on - strand, within DVU0081 at 99.218 kb on + strand, within DVU0081 at 99.229 kb on + strand, within DVU0081 at 99.239 kb on + strand, within DVU0081 at 99.246 kb on + strand, within DVU0081 at 99.247 kb on - strand, within DVU0081 at 99.303 kb on + strand, within DVU0081 at 99.303 kb on + strand, within DVU0081 at 99.303 kb on + strand, within DVU0081 at 99.311 kb on - strand, within DVU0081 at 99.311 kb on - strand, within DVU0081 at 99.311 kb on - strand, within DVU0081 at 99.314 kb on + strand, within DVU0081 at 99.337 kb on - strand, within DVU0081 at 99.337 kb on - strand, within DVU0081
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 96,004 + +1.9 96,004 + -0.5 96,035 - +0.5 96,076 + -0.4 96,081 + -0.7 96,089 - +3.0 96,092 + +0.0 96,092 + +0.7 96,100 - -0.2 96,102 + -2.3 96,102 + +0.5 96,102 + -1.9 96,102 + -1.0 96,102 + +1.4 96,102 + +0.2 96,102 + +1.4 96,102 + -0.4 96,102 + -1.3 96,110 - +1.3 96,110 - +1.2 96,110 - -0.1 96,110 - -0.9 96,202 + -1.8 96,221 + +2.0 96,221 + +3.9 96,221 + -1.3 96,221 + -0.8 96,229 - -0.6 96,229 - -2.2 96,231 + -1.3 96,243 + gufA DVU0079 0.10 +0.4 96,251 - gufA DVU0079 0.11 -1.2 96,251 - gufA DVU0079 0.11 -1.4 96,291 + gufA DVU0079 0.16 -1.3 96,354 - gufA DVU0079 0.24 +2.0 96,371 + gufA DVU0079 0.26 -0.6 96,399 - gufA DVU0079 0.30 -1.3 96,464 - gufA DVU0079 0.38 -0.3 96,549 + gufA DVU0079 0.49 +1.2 96,599 + gufA DVU0079 0.55 -1.2 96,611 + gufA DVU0079 0.56 +0.2 96,611 + gufA DVU0079 0.56 -1.3 96,638 + gufA DVU0079 0.60 +1.8 96,638 + gufA DVU0079 0.60 +0.9 96,646 - gufA DVU0079 0.61 -0.2 96,656 - gufA DVU0079 0.62 -0.9 96,679 + gufA DVU0079 0.65 -0.8 96,703 - gufA DVU0079 0.68 -1.2 96,747 + gufA DVU0079 0.73 +0.1 96,787 + gufA DVU0079 0.78 -1.1 96,806 + gufA DVU0079 0.80 -0.9 96,807 + gufA DVU0079 0.81 -0.7 96,821 - gufA DVU0079 0.82 -1.8 96,858 - gufA DVU0079 0.87 +0.9 96,886 - -1.9 96,912 - -0.4 96,966 - +3.6 97,053 - -0.7 97,073 - -1.5 97,145 + fumC DVU0080 0.10 -2.8 97,155 + fumC DVU0080 0.11 -1.8 97,155 + fumC DVU0080 0.11 -0.3 97,163 - fumC DVU0080 0.12 -0.4 97,163 - fumC DVU0080 0.12 -1.9 97,184 - fumC DVU0080 0.13 -1.7 97,280 + fumC DVU0080 0.20 -3.5 97,303 + fumC DVU0080 0.22 -2.8 97,335 + fumC DVU0080 0.24 +1.1 97,362 - fumC DVU0080 0.26 +0.2 97,364 - fumC DVU0080 0.26 -1.7 97,364 - fumC DVU0080 0.26 -1.7 97,364 - fumC DVU0080 0.26 -0.4 97,392 + fumC DVU0080 0.28 -0.9 97,478 + fumC DVU0080 0.34 -3.1 97,478 + fumC DVU0080 0.34 -1.6 97,543 + fumC DVU0080 0.39 -3.9 97,586 + fumC DVU0080 0.42 -1.1 97,671 - fumC DVU0080 0.48 -0.9 97,702 - fumC DVU0080 0.50 +0.3 97,720 + fumC DVU0080 0.51 -0.9 97,759 + fumC DVU0080 0.54 -1.3 97,788 + fumC DVU0080 0.56 -1.5 97,824 - fumC DVU0080 0.59 -1.2 97,828 - fumC DVU0080 0.59 -3.0 97,838 + fumC DVU0080 0.60 +1.6 97,935 - fumC DVU0080 0.66 -1.1 97,982 + fumC DVU0080 0.70 -1.6 97,985 - fumC DVU0080 0.70 +0.0 97,990 - fumC DVU0080 0.70 -4.1 97,990 - fumC DVU0080 0.70 -2.4 97,994 + fumC DVU0080 0.71 -1.3 97,999 + fumC DVU0080 0.71 -1.8 97,999 + fumC DVU0080 0.71 -2.2 98,007 - fumC DVU0080 0.72 +1.1 98,007 - fumC DVU0080 0.72 -2.1 98,022 + fumC DVU0080 0.73 -1.0 98,029 + fumC DVU0080 0.73 -0.1 98,030 - fumC DVU0080 0.73 +0.0 98,030 - fumC DVU0080 0.73 -1.5 98,034 + fumC DVU0080 0.73 -2.0 98,037 - fumC DVU0080 0.74 -1.8 98,147 - fumC DVU0080 0.82 +2.0 98,229 + fumC DVU0080 0.87 +0.5 98,236 + fumC DVU0080 0.88 -1.0 98,237 - fumC DVU0080 0.88 -1.9 98,254 + fumC DVU0080 0.89 -2.0 98,327 + +2.0 98,350 + -2.8 98,358 - -2.8 98,358 - +0.0 98,364 + +2.4 98,369 + -0.7 98,369 + +1.2 98,396 + -1.8 98,408 - -1.2 98,419 + -0.1 98,419 + +1.8 98,434 + -1.6 98,436 + -0.8 98,446 + +1.9 98,454 - -1.9 98,491 - -1.1 98,506 - +1.0 98,529 + +0.6 98,545 - +1.2 98,551 - -0.6 98,553 - +1.3 98,563 - -1.0 98,700 - +2.8 98,713 - -1.1 98,729 - -0.3 98,751 - DVU0081 0.11 +0.7 98,788 - DVU0081 0.13 +0.6 98,809 - DVU0081 0.14 +3.0 98,891 - DVU0081 0.19 +5.6 98,901 - DVU0081 0.20 -0.8 99,218 + DVU0081 0.38 +3.0 99,229 + DVU0081 0.39 -1.8 99,239 + DVU0081 0.39 -0.9 99,246 + DVU0081 0.40 -1.2 99,247 - DVU0081 0.40 -0.3 99,303 + DVU0081 0.43 +1.6 99,303 + DVU0081 0.43 -1.0 99,303 + DVU0081 0.43 +1.8 99,311 - DVU0081 0.43 +0.9 99,311 - DVU0081 0.43 -0.6 99,311 - DVU0081 0.43 +2.2 99,314 + DVU0081 0.44 +1.4 99,337 - DVU0081 0.45 +1.5 99,337 - DVU0081 0.45 +1.8
Or see this region's nucleotide sequence