Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2000

Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1999 and DVU2000 are separated by 949 nucleotidesDVU2000 and DVU2001 are separated by 34 nucleotides DVU1999: DVU1999 - sulfate transporter family protein (TIGR), at 2,079,560 to 2,081,704 DVU1999 DVU2000: DVU2000 - hypothetical protein (TIGR), at 2,082,654 to 2,082,743 DVU2000 DVU2001: DVU2001 - site-specific recombinase, phage integrase family, authentic frameshift (TIGR), at 2,082,778 to 2,084,039 DVU2001 Position (kb) 2082 2083Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2081.707 kb on - strandat 2081.894 kb on + strandat 2081.903 kb on - strandat 2081.916 kb on + strandat 2081.972 kb on + strandat 2081.980 kb on - strandat 2081.980 kb on - strandat 2081.985 kb on + strandat 2082.021 kb on + strandat 2082.151 kb on - strandat 2082.151 kb on - strandat 2082.198 kb on + strandat 2082.256 kb on - strandat 2082.329 kb on + strandat 2082.443 kb on - strandat 2082.561 kb on + strandat 2082.834 kb on + strandat 2083.030 kb on - strand, within DVU2001at 2083.058 kb on + strand, within DVU2001at 2083.066 kb on - strand, within DVU2001at 2083.209 kb on + strand, within DVU2001at 2083.209 kb on + strand, within DVU2001at 2083.217 kb on - strand, within DVU2001at 2083.270 kb on + strand, within DVU2001at 2083.273 kb on - strand, within DVU2001at 2083.303 kb on - strand, within DVU2001at 2083.391 kb on + strand, within DVU2001at 2083.439 kb on - strand, within DVU2001at 2083.490 kb on - strand, within DVU2001at 2083.625 kb on - strand, within DVU2001at 2083.641 kb on + strand, within DVU2001

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
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2,081,707 - +0.5
2,081,894 + +1.8
2,081,903 - -3.0
2,081,916 + +0.6
2,081,972 + -1.4
2,081,980 - -0.9
2,081,980 - -1.1
2,081,985 + -0.7
2,082,021 + -0.5
2,082,151 - -1.8
2,082,151 - -0.7
2,082,198 + +2.2
2,082,256 - +0.1
2,082,329 + -0.2
2,082,443 - -2.2
2,082,561 + -1.8
2,082,834 + +0.8
2,083,030 - DVU2001 0.20 +2.0
2,083,058 + DVU2001 0.22 -0.6
2,083,066 - DVU2001 0.23 +1.1
2,083,209 + DVU2001 0.34 -1.6
2,083,209 + DVU2001 0.34 -1.5
2,083,217 - DVU2001 0.35 -1.3
2,083,270 + DVU2001 0.39 -0.2
2,083,273 - DVU2001 0.39 -1.7
2,083,303 - DVU2001 0.42 -1.4
2,083,391 + DVU2001 0.49 -0.8
2,083,439 - DVU2001 0.52 -1.7
2,083,490 - DVU2001 0.56 -1.4
2,083,625 - DVU2001 0.67 -1.2
2,083,641 + DVU2001 0.68 -1.5

Or see this region's nucleotide sequence