Experiment: Pyruvate-Sulfite (60-20mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0896 and DVU0897 are separated by 1 nucleotides DVU0897 and DVU0898 are separated by 84 nucleotides DVU0898 and DVU0899 overlap by 4 nucleotides
DVU0896: DVU0896 - lipoprotein, NLP/P60 family (TIGR), at 988,431 to 989,825
DVU0896
DVU0897: DVU0897 - RNA modification enzyme, MiaB-family (TIGR), at 989,827 to 991,203
DVU0897
DVU0898: DVU0898 - conserved hypothetical protein (TIGR), at 991,288 to 992,169
DVU0898
DVU0899: DVU0899 - conserved hypothetical protein (TIGR), at 992,166 to 992,426
DVU0899
Position (kb) 989
990
991
992 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 988.847 kb on + strand, within DVU0896 at 988.847 kb on + strand, within DVU0896 at 988.847 kb on + strand, within DVU0896 at 988.848 kb on - strand, within DVU0896 at 988.855 kb on - strand, within DVU0896 at 988.855 kb on - strand, within DVU0896 at 988.932 kb on + strand, within DVU0896 at 988.932 kb on + strand, within DVU0896 at 988.952 kb on + strand, within DVU0896 at 988.953 kb on + strand, within DVU0896 at 988.959 kb on + strand, within DVU0896 at 988.960 kb on - strand, within DVU0896 at 988.961 kb on - strand, within DVU0896 at 989.021 kb on - strand, within DVU0896 at 989.032 kb on + strand, within DVU0896 at 989.040 kb on - strand, within DVU0896 at 989.142 kb on - strand, within DVU0896 at 989.153 kb on + strand, within DVU0896 at 989.173 kb on - strand, within DVU0896 at 989.212 kb on - strand, within DVU0896 at 989.253 kb on + strand, within DVU0896 at 989.256 kb on - strand, within DVU0896 at 989.261 kb on - strand, within DVU0896 at 989.274 kb on + strand, within DVU0896 at 989.295 kb on - strand, within DVU0896 at 989.390 kb on + strand, within DVU0896 at 989.390 kb on + strand, within DVU0896 at 989.431 kb on + strand, within DVU0896 at 989.431 kb on + strand, within DVU0896 at 989.439 kb on - strand, within DVU0896 at 989.495 kb on + strand, within DVU0896 at 989.495 kb on + strand, within DVU0896 at 989.495 kb on + strand, within DVU0896 at 989.503 kb on - strand, within DVU0896 at 989.617 kb on + strand, within DVU0896 at 989.633 kb on - strand, within DVU0896 at 989.725 kb on + strand at 989.743 kb on - strand at 989.785 kb on - strand at 989.785 kb on - strand at 989.991 kb on - strand, within DVU0897 at 990.103 kb on + strand, within DVU0897 at 990.146 kb on - strand, within DVU0897 at 990.157 kb on + strand, within DVU0897 at 990.247 kb on - strand, within DVU0897 at 990.270 kb on + strand, within DVU0897 at 990.339 kb on - strand, within DVU0897 at 990.398 kb on + strand, within DVU0897 at 990.564 kb on - strand, within DVU0897 at 990.626 kb on + strand, within DVU0897 at 990.634 kb on - strand, within DVU0897 at 990.692 kb on + strand, within DVU0897 at 990.729 kb on - strand, within DVU0897 at 990.917 kb on - strand, within DVU0897 at 990.917 kb on - strand, within DVU0897 at 991.069 kb on - strand at 991.089 kb on + strand at 991.134 kb on + strand at 991.135 kb on - strand at 991.218 kb on + strand at 991.279 kb on - strand at 991.291 kb on - strand at 991.349 kb on + strand at 991.355 kb on - strand at 991.372 kb on - strand at 991.395 kb on - strand, within DVU0898 at 991.418 kb on + strand, within DVU0898 at 991.483 kb on - strand, within DVU0898 at 991.504 kb on - strand, within DVU0898 at 991.507 kb on + strand, within DVU0898 at 991.507 kb on + strand, within DVU0898 at 991.546 kb on + strand, within DVU0898 at 991.685 kb on + strand, within DVU0898 at 991.730 kb on + strand, within DVU0898 at 991.738 kb on - strand, within DVU0898 at 991.738 kb on - strand, within DVU0898 at 991.793 kb on - strand, within DVU0898 at 991.821 kb on + strand, within DVU0898 at 991.876 kb on + strand, within DVU0898 at 991.914 kb on + strand, within DVU0898 at 991.937 kb on + strand, within DVU0898 at 991.998 kb on + strand, within DVU0898 at 992.090 kb on - strand at 992.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Tungstate 2mM remove 988,847 + DVU0896 0.30 -0.6 988,847 + DVU0896 0.30 +0.3 988,847 + DVU0896 0.30 +1.5 988,848 - DVU0896 0.30 +1.9 988,855 - DVU0896 0.30 -1.1 988,855 - DVU0896 0.30 +2.7 988,932 + DVU0896 0.36 -0.5 988,932 + DVU0896 0.36 -1.0 988,952 + DVU0896 0.37 -1.5 988,953 + DVU0896 0.37 -0.9 988,959 + DVU0896 0.38 -0.8 988,960 - DVU0896 0.38 -0.2 988,961 - DVU0896 0.38 +1.7 989,021 - DVU0896 0.42 -2.3 989,032 + DVU0896 0.43 +2.1 989,040 - DVU0896 0.44 -0.5 989,142 - DVU0896 0.51 -1.1 989,153 + DVU0896 0.52 -1.2 989,173 - DVU0896 0.53 +0.8 989,212 - DVU0896 0.56 +0.5 989,253 + DVU0896 0.59 -1.3 989,256 - DVU0896 0.59 -0.9 989,261 - DVU0896 0.59 -2.7 989,274 + DVU0896 0.60 -1.2 989,295 - DVU0896 0.62 +1.4 989,390 + DVU0896 0.69 -1.2 989,390 + DVU0896 0.69 -0.6 989,431 + DVU0896 0.72 +3.1 989,431 + DVU0896 0.72 -1.2 989,439 - DVU0896 0.72 -0.6 989,495 + DVU0896 0.76 -0.9 989,495 + DVU0896 0.76 -1.1 989,495 + DVU0896 0.76 -0.9 989,503 - DVU0896 0.77 +2.1 989,617 + DVU0896 0.85 -0.6 989,633 - DVU0896 0.86 -0.6 989,725 + +0.4 989,743 - +1.3 989,785 - -2.5 989,785 - +0.0 989,991 - DVU0897 0.12 +1.0 990,103 + DVU0897 0.20 +1.1 990,146 - DVU0897 0.23 +3.7 990,157 + DVU0897 0.24 -2.6 990,247 - DVU0897 0.31 +4.4 990,270 + DVU0897 0.32 +0.3 990,339 - DVU0897 0.37 -2.1 990,398 + DVU0897 0.41 -1.1 990,564 - DVU0897 0.54 -0.5 990,626 + DVU0897 0.58 +1.4 990,634 - DVU0897 0.59 -1.3 990,692 + DVU0897 0.63 +1.1 990,729 - DVU0897 0.66 +1.0 990,917 - DVU0897 0.79 -0.2 990,917 - DVU0897 0.79 -0.4 991,069 - +0.8 991,089 + -1.0 991,134 + +0.0 991,135 - +1.4 991,218 + +0.3 991,279 - +1.3 991,291 - +0.3 991,349 + +3.3 991,355 - +2.7 991,372 - +2.6 991,395 - DVU0898 0.12 +2.3 991,418 + DVU0898 0.15 +1.7 991,483 - DVU0898 0.22 -0.3 991,504 - DVU0898 0.24 +0.5 991,507 + DVU0898 0.25 +3.2 991,507 + DVU0898 0.25 +0.8 991,546 + DVU0898 0.29 -0.6 991,685 + DVU0898 0.45 +0.7 991,730 + DVU0898 0.50 +1.5 991,738 - DVU0898 0.51 +3.1 991,738 - DVU0898 0.51 +1.0 991,793 - DVU0898 0.57 +1.0 991,821 + DVU0898 0.60 +0.9 991,876 + DVU0898 0.67 +0.4 991,914 + DVU0898 0.71 +0.5 991,937 + DVU0898 0.74 +0.9 991,998 + DVU0898 0.80 +2.7 992,090 - +1.1 992,139 - +1.8
Or see this region's nucleotide sequence